Merge pull request #25 from pnlbwh/replace-tmp

replace /tmp with gettempdir()
pnlbwh · Jan 22, 2021 · febeb50 · febeb50
2 parents 1b57776 + 142becb
commit febeb50
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Showing 5 changed files with 5 additions and 4 deletions.
diff --git a/lib/buildTemplate.py b/lib/buildTemplate.py
@@ -23,7 +23,7 @@
 eps= 2.2204e-16
 SCRIPTDIR= dirname(__file__)
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 N_shm = int(config['DEFAULT']['N_shm'])
 N_proc = int(config['DEFAULT']['N_proc'])
 bshell_b = int(config['DEFAULT']['bshell_b'])

diff --git a/lib/debug_fa.py b/lib/debug_fa.py
@@ -23,7 +23,7 @@
 mniTmp = pjoin(ROOTDIR, 'IITAtlas', 'IITmean_FA.nii.gz')
 
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 N_proc = int(config['DEFAULT']['N_proc'])
 diffusionMeasures = [x for x in config['DEFAULT']['diffusionMeasures'].split(',')]
 bshell_b = int(config['DEFAULT']['bshell_b'])

diff --git a/lib/preprocess.py b/lib/preprocess.py
@@ -24,7 +24,7 @@
 
 SCRIPTDIR= dirname(__file__)
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 
 N_shm = int(config['DEFAULT']['N_shm'])
 N_proc = int(config['DEFAULT']['N_proc'])

diff --git a/lib/reconstSignal.py b/lib/reconstSignal.py
@@ -24,7 +24,7 @@
 eps= 2.2204e-16
 SCRIPTDIR= dirname(__file__)
 config = ConfigParser()
-config.read(f'/tmp/harm_config_{getpid()}.ini')
+config.read(pjoin(gettempdir(),f'harm_config_{getpid()}.ini'))
 N_shm = int(config['DEFAULT']['N_shm'])
 N_proc = int(config['DEFAULT']['N_proc'])
 bshell_b = int(config['DEFAULT']['bshell_b'])

diff --git a/lib/util.py b/lib/util.py
@@ -18,6 +18,7 @@
 from shutil import copyfile, rmtree
 import numpy as np
 import shutil, sys
+from tempfile import gettempdir
 
 SCRIPTDIR= abspath(dirname(__file__))