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Remove invalid test instruction #37

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merged 4 commits into from
Nov 19, 2024
Merged

Remove invalid test instruction #37

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099f971
* remove invalid test instruction
tashrifbillah Nov 19, 2024
f5c33ec
insert beginning /
tashrifbillah Nov 19, 2024
a31559b
remove invalid unittest
tashrifbillah Nov 19, 2024
fdb617f
minor change
tashrifbillah Nov 19, 2024
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15 changes: 4 additions & 11 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -436,27 +436,20 @@ The steps are described below:

# Tests

A small test data is provided with each [release](https://github.com/pnlbwh/multi-shell-dMRIharmonization/releases).
**TBD** Tests are incomplete as of now but will be completed soon.


## 1. pipeline
You may test the whole pipeline as follows:

cd multi-shell-dMRIharmonization/lib/tests
./multi_pipeline_test.sh

**NOTE** Running the above tests might take six hours.

Clone single-shell dMRIharmonization pipeline and test that:
https://github.com/pnlbwh/dMRIharmonization?tab=readme-ov-file#1-pipeline

\* If there is any problem downloading test data, try manually downloading and unzipping it to `lib/tests/` folder.
Success of this test will confirm that your environment is properly set up to run multi-shell-dMRIharmonization.


## 2. unittest
You may run smaller and faster unittest as follows:

python -m unittest discover -v lib/tests/

**TBD**


# Preprocessing
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2 changes: 1 addition & 1 deletion lib/tests/README.md
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Expand Up @@ -6,5 +6,5 @@ Execution of

will need PYTHONPATH to be defined like:

export PYTHONPATH=path/to/multi-shell-dMRIharmonization/lib/
export PYTHONPATH=/path/to/multi-shell-dMRIharmonization/lib/