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Singularity container from Docker container

Tashrif Billah edited this page Aug 23, 2021 · 1 revision

The recommended way to get our Singularity container is noted here. You may also build the container bootstrapping around our docker container:

export SINGULARITY_TMPDIR=$HOME
singularity build pnlpipe.sif docker://tbillah/pnlpipe:latest

But then you would have to source the software environment every time you use the container:

singularity shell pnlpipe.sif

singularity> source /home/pnlbwh/.bashrc
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