Fix failing tests

pombase · Apr 23, 2024 · 327b73a · 327b73a
1 parent 388a70d
commit 327b73a
Show file tree

Hide file tree

Showing 18 changed files with 2 additions and 13 deletions.
diff --git a/db_templates/curs_db_template.sqlite3 b/db_templates/curs_db_template.sqlite3
diff --git a/db_templates/ontology_index_dir/segments b/db_templates/ontology_index_dir/segments
diff --git a/db_templates/track_db_template.sqlite3 b/db_templates/track_db_template.sqlite3
diff --git a/lib/Canto/CursDB/Allele.pm b/lib/Canto/CursDB/Allele.pm
@@ -72,11 +72,6 @@ __PACKAGE__->table("allele");
   data_type: 'text'
   is_nullable: 1
 
-=head2 exogenous_promoter
-
-  data_type: 'text'
-  is_nullable: 1
-
 =head2 gene
 
   data_type: 'integer'
@@ -104,8 +99,6 @@ __PACKAGE__->add_columns(
   { data_type => "text", is_nullable => 1 },
   "promoter_gene",
   { data_type => "text", is_nullable => 1 },
-  "exogenous_promoter",
-  { data_type => "text", is_nullable => 1 },
   "gene",
   { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
 );
@@ -204,8 +197,8 @@ __PACKAGE__->belongs_to(
 );
 
 
-# Created by DBIx::Class::Schema::Loader v0.07049 @ 2024-03-18 12:05:26
-# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:XzWBGRf7AOA0gkFW5u5qcg
+# Created by DBIx::Class::Schema::Loader v0.07049 @ 2024-04-23 15:38:48
+# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:zwunCW+YljT30wPa79v39A
 
 __PACKAGE__->many_to_many('genotypes' => 'allele_genotypes',
                           'genotype');
@@ -255,10 +248,6 @@ sub long_identifier
     $ret .= '{promoter:' . $self->promoter_gene() . '}';
   }
 
-  if ($self->exogenous_promoter()) {
-    $ret .= '{exogenous_promoter:' . $self->exogenous_promoter() . '}';
-  }
-
   return $ret;
 }
 

diff --git a/t/data/curs_aaaa0001.sqlite3 b/t/data/curs_aaaa0001.sqlite3
diff --git a/t/data/curs_aaaa0002.sqlite3 b/t/data/curs_aaaa0002.sqlite3
diff --git a/t/data/curs_aaaa0003.sqlite3 b/t/data/curs_aaaa0003.sqlite3
diff --git a/t/data/curs_aaaa0004.sqlite3 b/t/data/curs_aaaa0004.sqlite3
diff --git a/t/data/curs_aaaa0005.sqlite3 b/t/data/curs_aaaa0005.sqlite3
diff --git a/t/data/curs_aaaa0006.sqlite3 b/t/data/curs_aaaa0006.sqlite3
diff --git a/t/data/curs_aaaa0007.sqlite3 b/t/data/curs_aaaa0007.sqlite3
diff --git a/t/data/ontology_index/segments b/t/data/ontology_index/segments
diff --git a/t/data/track_0_curs_test_template.sqlite3 b/t/data/track_0_curs_test_template.sqlite3
diff --git a/t/data/track_1_curs_test_template.sqlite3 b/t/data/track_1_curs_test_template.sqlite3
diff --git a/t/data/track_3_curs_test_template.sqlite3 b/t/data/track_3_curs_test_template.sqlite3
diff --git a/t/data/track_curs_annotations_1_test_template.sqlite3 b/t/data/track_curs_annotations_1_test_template.sqlite3
diff --git a/t/data/track_curs_annotations_2_test_template.sqlite3 b/t/data/track_curs_annotations_2_test_template.sqlite3
diff --git a/t/data/track_empty_db_test_template.sqlite3 b/t/data/track_empty_db_test_template.sqlite3