NAMESPACE

# Generated by roxygen2: do not edit by hand

export(Annotation)
export(Grp2Analysis)
export(MQtoMSstatsFormat)
export(MSstatsMapping)
export(PeptideTable)
export(ProteinTable)
export(ProteinTableR6)
export(ProteinVariableSelect)
export(QCProteinReport)
export(RMD_LibraryGen_specLProzor)
export(RMD_MQ_Quant_2GrpAnalysis)
export(RMD_MQ_Quant_QCReport)
export(RMD_PD_Quant_2GrpAnalysis)
export(RMD_QC1To1_Old)
export(RMD_SRM_QC_Normalization)
export(RMD_VarSelection)
export(SRMService)
export(TransitionTable)
export(annotationColumns)
export(contrasts.fit.NA)
export(eb.fit)
export(fgcz_render_One2OneReport)
export(fixScaffoldQuantReport)
export(fix_PD_inputFiles)
export(getConditionColumns)
export(getIDLabels)
export(getIntensities)
export(getPVals)
export(getRequiredColumns)
export(mergeLimmEBayesResult)
export(multigroupEBaysQvalue)
export(piwotPiw)
export(plotNicely)
export(proteinColumns)
export(remap_PD_ProteinTable)
export(transitionCorrelations)
export(transitionCorrelationsJack)
exportClasses(Grp2Analysis)
exportClasses(PeptideTable)
exportClasses(ProteinTable)
exportClasses(QCProteinReport)
exportClasses(SRMService)
exportClasses(TransitionTable)
import(dplyr)
import(limma)
import(methods)
import(parallel)
import(quantable)
import(reshape2)
import(rlang)
import(scales)
import(tidyr)
importFrom(R6,R6Class)
importFrom(dplyr,mutate)
importFrom(limma,lmFit)
importFrom(plyr,join_all)
importFrom(reshape2,dcast)
importFrom(stats,cor)
importFrom(tibble,tibble)
importFrom(utils,Stangle)
importFrom(utils,Sweave)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.table)