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UCL Bioinformatics Group

UCL bioinformatics group repositories

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  1. protein-vae protein-vae Public

    Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

    Python 80 17

  2. DMPfold DMPfold Public

    De novo protein structure prediction using iteratively predicted structural constraints

    C 55 16

  3. cgdms cgdms Public

    Differentiable molecular simulation of proteins with a coarse-grained potential

    Python 53 4

  4. psipred psipred Public

    PSIPRED Protein Secondary Structure Predictor

    Java 51 12

  5. DMPfold2 DMPfold2 Public

    Fast and accurate protein structure prediction

    Python 49 12

  6. s4pred s4pred Public

    A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

    Python 48 9

Repositories

Showing 10 of 46 repositories
  • Merizo Public

    Fast and accurate protein domain segmentation using Invariant Point Attention

    psipred/Merizo’s past year of commit activity
    Python 26 GPL-3.0 5 1 0 Updated Oct 30, 2024
  • merizo_search Public

    Fast protein domain structure embedding+search tool

    psipred/merizo_search’s past year of commit activity
    Python 8 GPL-3.0 3 1 0 Updated Oct 29, 2024
  • ted-tools Public

    ML toolset for creating TED: The Encyclopedia of Domains

    psipred/ted-tools’s past year of commit activity
    Python 7 MIT 1 0 0 Updated Aug 27, 2024
  • psipred_react Public

    A react port of the psipred_webserver dynamic pages

    psipred/psipred_react’s past year of commit activity
    JavaScript 1 0 1 0 Updated Aug 22, 2024
  • analytics_automated Public Forked from AnalyticsAutomated/analytics_automated

    Middleware layer for exposing analytics and distributed computing jobs as web services

    psipred/analytics_automated’s past year of commit activity
    Python 0 4 0 0 Updated Aug 18, 2024
  • p53_docking Public

    Project code for Chris Morris collab

    psipred/p53_docking’s past year of commit activity
    Python 0 0 0 0 Updated Jul 26, 2024
  • s4pred Public

    A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

    psipred/s4pred’s past year of commit activity
    Python 48 GPL-3.0 9 1 0 Updated Jul 24, 2024
  • webserver_test_dbs Public

    A really tiny slice of the top of a late 2015 uniref90 release, plust BLAST db formatting

    psipred/webserver_test_dbs’s past year of commit activity
    0 0 0 0 Updated Jun 12, 2024
  • ansible_rocky Public

    new, united ansible repo for rocky machines

    psipred/ansible_rocky’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 11, 2024
  • DMPmetal Public

    repository for the DMPmetal metal binding site predictor

    psipred/DMPmetal’s past year of commit activity
    Python 0 0 0 0 Updated Apr 18, 2024

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