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Produce a DATS example #95

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mih opened this issue Mar 11, 2024 · 1 comment · Fixed by #98
Open

Produce a DATS example #95

mih opened this issue Mar 11, 2024 · 1 comment · Fixed by #98

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@mih
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mih commented Mar 11, 2024

https://www.nature.com/articles/sdata201759

https://datatagsuite.github.io/docs/html/

@mih: this is what you are looking for https://datatagsuite.github.io/context

https://portal.conp.ca/dataset?id=projects/multicenter-phantom (and similar pages) have one linked.

Copy of record
{
    "title": "Multicenter Single Subject Human MRI Phantom",
    "description": "Longitudinal brain scans of a single human phantom acquired on multiple MRI devices across North America over a period of 11 years. In addition to the human brain images, lego phantom scans have been acquired in parallel for quality assessments over time across sites.",
    "dates": [
        {
            "date": "2008-04-25 00:00:00",
            "type": {
                "@type": "Annotation",
                "value": "start date"
            }
        },
        {
            "date": "2019-04-15 00:00:00",
            "type": {
                "@type": "Annotation",
                "value": "end date"
            }
        }
    ],
    "creators": [
        {
            "name": "McGill Center for Integrative Neuroscience",
            "abbreviation": "MCIN"
        },
        {
                "name": "Alan C. Evans",
                "roles": [
                        {
                                "value": "Principal Investigator"
                        }
                ]
        }
    ],
    "types": [
        {
            "information": {
                "value": "MRI",
                "valueIRI": ""
            }
        },
        {
            "information": {
                "value": "quality control subject",
                "valueIRI": "http://uri.interlex.org/base/ilx_0381893"
            }
        }
    ],
    "version": "2.0",
    "privacy": "open",
    "distributions": [
        {
            "@type": "DatasetDistribution",
            "formats": [
                "MINC",
                "JSON"
            ],
            "size" : 40,
            "unit" : {
                "value": "GB"
            },
            "access" : {
                "landingPage" : "https://phantom.loris.ca",
                                "authorizations": [
                                        {
                                                "value": "private"
                                        }
                                ]
            }
        }
    ],
    "isAbout": [
        {
              "identifier": {
                        "identifier": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606",
                                        "identifierSource": "NCBI Taxonomy Database"
              },
              "name":"Homo sapiens"
        },
        {
            "name": "adult"
        }
    ],
    "spatialCoverage": [
        {
            "name": "North America",
            "description": "13 scanners in 6 sites accross North America"
        }
    ],
    "licenses": [
        {
            "@type": "License",
            "name": "CC BY-ND",
            "version": "4.0"
        }
    ],
    "aggregation": "instance of dataset",
    "dimensions": [
        {
            "name" : {
                "value": "resting BOLD"
            }
        },
        {
            "name" : {
                "value": "fieldmap BOLD"
            }
        },
        {
            "name" : {
                "value": "fieldmap DWI"
            }
        },
        {
            "name" : {
                "value": "DWI 65 directions"
            }
        },
        {
            "name" : {
                "value": "DWI 25 directions"
            }
        },
        {
            "name" : {
                "value": "T1W"
            }
        },
        {
            "name" : {
                "value": "T2W"
            }
        }
    ],
    "keywords": [
        {
            "value": "phantom"
        },
        {
            "value": "MRI"
        }
    ],
    "extraProperties": [
        {
            "category": "Total number of sessions",
            "values": [
                {
                    "value": "521"
                }
            ]
        },
                {
                        "category": "logo",
                        "values": [
                                {
                                        "value": "logo.png"
                                }
                        ]
                },
                {
                        "category": "CONP_status",
                        "values": [
                                {
                                        "value": "CONP"
                                }
                        ]
                },
                {
                        "category": "files",
                        "values": [
                                {
                                        "value": "3771"
                                }
                        ]
                },
                {
                        "category": "subjects",
                        "values": [
                                {
                                        "value": "1"
                                }
                        ]
                },
        {
            "category": "origin_consortium",
            "values": [
                {
                    "value": "IBIS"
                }
            ]
        },
        {
            "category": "origin_institution",
            "values": [
                {
                    "value": "McGill Centre for Integrative Neuroscience"
                }
            ]
        },
        {
            "category": "origin_city",
            "values": [
                {
                    "value": "Montreal"
                }
            ]
        },
        {
            "category": "origin_province",
            "values": [
                {
                    "value": "Quebec"
                }
            ]
        },
        {
            "category": "origin_country",
            "values": [
                {
                    "value": "Canada"
                }
            ]
        }
    ]
}
@mih
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mih commented Mar 14, 2024

Not yet complete

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