| description |
|---|
Some projects from cbioportal.org to use as example projects to examine how they set up their import files |
| Project Name | Data Files | Short name |
|---|---|---|
| Breast Invasive Carcinoma (TCGA, Firehose Legacy) | Includes protein files, expression files, CNA files, methylation, mutations, seg, mutsig, gistic files, RNA Seq and mRNA expression files, clinical | brca_tcga |
| Ovarian Serous Cystadenocarcinoma (TCGA, Firehose Legacy) | Includes protein files, expression files, CNA files, methylation, mutations, seg, gistic, RNA Seq and mRNA expression files, clinical | ov_tcga |
| Tumors with TRK fusions (MSK, Clin Cancer Res 2020) | Includes fusion, CNA, mutations, timeline (new cBio method of all event types in one file, here its Treatment + Surgery), clinical | ntrk_msk_2019 |
| Glioma (MSKCC, Clin Cancer Res 2019) | Includes timeline, fusions, CNA, mutations, gene matrix file, clinical | glioma_mskcc_2019 |
| Low-Grade Gliomas (UCSF, Science 2014) | Includes multiple timeline files, clinical files, mutations | lgg_ucsf_2014 |
| Metastatic Breast Cancer (MSK, Cancer Discovery 2021) | Includes structural variant, fusions, CNA, mutations, gene matrix, clinical, timeline | breast_ink4_msk_2021 |