README.md

Jupyter Notebooks to work with various SymPhoTime files

Tested under Jupyter Notebooks 5.4.0

At the moment this repository only contains exemplary Notebooks to illustrate how to work with the tiff files generated by SymPhoTime64 (http://www.picoquant.com/products/category/software/symphotime-64-fluorescence-lifetime-imaging-and-correlation-software)

Installing / Running

Docker2Repo

The easiest way of setting up Jupyter to run the notebooks of this repository is generating a Docker image specifically for the Notebooks.

1. Install Docker
   • Windows: https://docs.docker.com/docker-for-windows/install/
   • OSX: https://docs.docker.com/docker-for-mac/install/
   • Ubuntu: https://docs.docker.com/engine/installation/linux/docker-ce/ubuntu/
2. Install Docker2Repo (https://github.com/jupyter/repo2docker)

pip install jupyter-repo2docker

3. Create and run Docker image directly from this repository

jupyter-repo2docker git@github.com:PicoQuant/Notebooks.git

Conda

If you would like to work locally...

1. Download the files into a local directory.

2. You can also install locally the Anaconda distribution of Python 3.

   https://www.anaconda.com/download/ for windows, linux etc.

3. After installation , launch the "Anaconda Navigator" and start the Jupyter Notebook Environment.

4. Open the jupyter notebooks