Push matlab binaries github action

.github/workflows/publish_matlab_binaries.yml

@@ -0,0 +1,104 @@
+name: Publish MATLAB binaries
+
+on: 
+  release: 
+    types: [published]
+
+env:
+  BUILD_FOLDER: build
+
+jobs:
+  build:
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        version: [R2021b, R2022a, R2022b, R2023a, R2023b, R2024a]
+        include:
+          - os: ubuntu-latest
+            label: linux-64
+            prefix: /usr/share/miniconda3/envs/ezc3d
+          - os: macos-latest
+            label: osx-64
+            prefix: /Users/runner/miniconda3/envs/ezc3d
+          - os: windows-latest
+            label: win-64
+            prefix: C:\Miniconda3\envs\ezc3d
+        exclude:
+          - os: macos-latest
+            version: R2023b
+          - os: macos-latest
+            version: R2024a
+    name: ${{ matrix.label }}_${{ matrix.version }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Get number of CPU cores
+        uses: SimenB/github-actions-cpu-cores@v1
+        id: cpu-cores
+
+      - name: Setup environment
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          miniforge-variant: Mambaforge
+          miniforge-version: latest
+          use-mamba: true
+
+      - name: Print mamba info
+        run: | 
+          mamba info
+          mamba list
+
+      - name: Install dependencies
+        run: | 
+          mamba install cmake git pkgconfig -cconda-forge
+          mamba list
+          git submodule update --init --recursive
+
+      - name: Install MATLAB
+        uses: matlab-actions/setup-matlab@v2
+        with:
+          release: ${{ matrix.version }}
+
+      - name: Build ezc3d on UNIX
+        run: |
+          MAIN_FOLDER=`pwd`
+          cd
+          HOME=`pwd`
+          cd $MAIN_FOLDER
+          CONDA_ENV_PATH=$CONDA/envs/ezc3d
+          mkdir -p $MAIN_FOLDER/$BUILD_FOLDER
+          cd $MAIN_FOLDER/$BUILD_FOLDER
+          cmake -DCMAKE_INSTALL_PREFIX=$CONDA_ENV_PATH -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=OFF -DBUILD_TESTS=OFF -DBUILD_DOC=OFF -DBUILD_EXAMPLE=OFF -DUSE_MATRIX_FAST_ACCESSOR=OFF -DBINDER_MATLAB=ON -DMatlab_ezc3d_INSTALL_DIR=$HOME -DBINDER_PYTHON3=OFF ..
+          make install -j${{ steps.cpu-cores.outputs.count }}
+          cd $MAIN_FOLDER
+        if: matrix.label != 'win-64'
+
+      - name: Build ezc3d on WINDOWS
+        run: |
+          MAIN_FOLDER=`pwd`
+          CONDA_ENV_PATH=$CONDA/envs/ezc3d
+          mkdir -p $BUILD_FOLDER
+          cd $BUILD_FOLDER
+          cmake -G"Visual Studio 17 2022" -Ax64 -DCMAKE_INSTALL_PREFIX=$CONDA_ENV_PATH -DCMAKE_BUILD_TYPE=Release -DBUILD_SHARED_LIBS=OFF -DBUILD_TESTS=OFF -DBUILD_DOC=OFF -DBUILD_EXAMPLE=OFF -DUSE_MATRIX_FAST_ACCESSOR=OFF -DBINDER_MATLAB=ON -DMatlab_ezc3d_INSTALL_DIR=$HOME -DBINDER_PYTHON3=OFF ..
+          cmake --build . --config Release --target install -j${{ steps.cpu-cores.outputs.count }}
+          cd $MAIN_FOLDER
+        if: matrix.label == 'win-64'
+
+      - name: Build MATLAB archives
+        run: |
+          zip -r ezc3d_matlab.zip $HOME/ezc3d_matlab
+
+      - name: Upload files to a GitHub release
+        uses: xresloader/upload-to-github-release@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        with:
+          file: "ezc3d_matlab_${{ matrix.label }}_${{ matrix.version }}.zip"
+          update_latest_release: true
+          verbose: true
+          overwrite: true

.github/workflows/run_codecoverage.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       matrix:
         include:
-          - os: ubuntu-20.04
+          - os: ubuntu-latest
             label: linux-64
             prefix: /usr/share/miniconda3/envs/biorbd_eigen
     name: ${{ matrix.label }}

.github/workflows/run_matlab_tests.yml

@@ -0,0 +1,100 @@
+name: Run the Matlab tests
+
+on: [pull_request]
+
+env:
+  BUILD_FOLDER: build
+
+jobs:
+  build:
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        version: [R2021b, R2022a, R2022b, R2023a, R2023b, R2024a]
+        include:
+          - os: ubuntu-latest
+            label: linux-64
+            prefix: /usr/share/miniconda3/envs/ezc3d
+          - os: macos-latest
+            label: osx-64
+            prefix: /Users/runner/miniconda3/envs/ezc3d
+          - os: windows-latest
+            label: win-64
+            prefix: C:\Miniconda3\envs\ezc3d
+        exclude:
+          - os: macos-latest
+            version: R2023b
+          - os: macos-latest
+            version: R2024a
+    name: ${{ matrix.label }}_${{ matrix.version }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+      run:
+        shell: bash -l {0}
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Get number of CPU cores
+        uses: SimenB/github-actions-cpu-cores@v1
+        id: cpu-cores
+
+      - name: Setup environment
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          miniforge-variant: Mambaforge
+          miniforge-version: latest
+          use-mamba: true
+
+      - name: Print mamba info
+        run: | 
+          mamba info
+          mamba list
+
+      - name: Install dependencies
+        run: | 
+          mamba install cmake git pkgconfig -cconda-forge
+          mamba list
+          git submodule update --init --recursive
+
+      - name: Install MATLAB
+        uses: matlab-actions/setup-matlab@v2
+        with:
+          release: ${{ matrix.version }}
+
+      - name: Build ezc3d on UNIX
+        run: |
+          MAIN_FOLDER=`pwd`
+          cd
+          HOME=`pwd`
+          cd $MAIN_FOLDER
+          CONDA_ENV_PATH=$CONDA/envs/ezc3d
+          mkdir -p $MAIN_FOLDER/$BUILD_FOLDER
+          cd $MAIN_FOLDER/$BUILD_FOLDER
+          cmake -DCMAKE_INSTALL_PREFIX=$CONDA_ENV_PATH -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTS=OFF -DBUILD_DOC=OFF -DBUILD_EXAMPLE=OFF -DUSE_MATRIX_FAST_ACCESSOR=OFF -DBINDER_MATLAB=ON -DMatlab_ezc3d_INSTALL_DIR=$HOME -DBINDER_PYTHON3=OFF ..
+          make install -j${{ steps.cpu-cores.outputs.count }}
+          cd $MAIN_FOLDER
+        if: matrix.label != 'win-64'
+
+      - name: Build ezc3d on WINDOWS
+        run: |
+          MAIN_FOLDER=`pwd`
+          CONDA_ENV_PATH=$CONDA/envs/ezc3d
+          mkdir -p $BUILD_FOLDER
+          cd $BUILD_FOLDER
+          cmake -G"Visual Studio 17 2022" -Ax64 -DCMAKE_INSTALL_PREFIX=$CONDA_ENV_PATH -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTS=OFF -DBUILD_DOC=OFF -DBUILD_EXAMPLE=OFF -DUSE_MATRIX_FAST_ACCESSOR=OFF -DBINDER_MATLAB=ON -DMatlab_ezc3d_INSTALL_DIR=$HOME -DBINDER_PYTHON3=OFF ..
+          cmake --build . --config Release --target install -j${{ steps.cpu-cores.outputs.count }}
+          cd $MAIN_FOLDER
+        if: matrix.label == 'win-64'
+
+      - name: Run the MATLAB binder tests
+        run: |
+          MAIN_FOLDER=`pwd`
+          cd
+          HOME=`pwd`
+          cd $MAIN_FOLDER/test/matlab
+          cp $HOME/ezc3d_matlab/* .
+          # We cannot run the tests as we do not have a license. They are however run on octave
+          # matlab -batch test_binder_matlab.m
+          # matlab -batch test_binder_matlab_force_platform.m
+          cd $MAIN_FOLDER

.github/workflows/run_octave_tests.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       matrix:
         include:
-          - os: ubuntu-20.04
+          - os: ubuntu-latest
             label: linux-64
             prefix: /usr/share/miniconda3/envs/ezc3d
           - os: macos-latest

.github/workflows/run_tests.yml

@@ -11,7 +11,7 @@ jobs:
     strategy:
       matrix:
         include:
-          - os: ubuntu-20.04
+          - os: ubuntu-latest
             label: linux-64
             prefix: /usr/share/miniconda3/envs/ezc3d
           - os: macos-latest
@@ -74,7 +74,6 @@ jobs:
       - name: Build ezc3d WINDOWS
         run: |
           MAIN_FOLDER=`pwd`
-          echo ${{ matrix.prefix }}
           CONDA_ENV_PATH=$CONDA/envs/ezc3d
           mkdir -p $BUILD_FOLDER
           cd $BUILD_FOLDER