Change transform.py to numpydoc style #257
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| name: Build and Test Slycot | |
| on: | |
| push: | |
| pull_request: | |
| paths-ignore: | |
| - '.gitignore' | |
| - 'AUTHORS' | |
| - 'COPYING' | |
| - 'gpl-2.0.txt' | |
| - 'MANIFEST.in' | |
| - 'README.rst' | |
| jobs: | |
| build-sdist: | |
| # Super fast sniff build. If this fails, don't start the other jobs | |
| name: Build sdist on Ubuntu | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| submodules: 'recursive' | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Setup Ubuntu | |
| run: | | |
| sudo apt-get -y install gfortran cmake --fix-missing | |
| sudo apt-get -y install libblas-dev liblapack-dev | |
| - name: Create Slycot sdist | |
| run: | | |
| pip install build | |
| python -m build --sdist | |
| - name: Install Slycot sdist | |
| run: | | |
| mkdir cleancwd | |
| cd cleancwd | |
| tar xfz ../dist/slycot-*.tar.gz | |
| cd slycot-* | |
| pip install -v . | |
| - name: Run tests | |
| run: | | |
| pip install scipy pytest | |
| pytest | |
| build-pip: | |
| name: Build pip Py${{ matrix.python }}, ${{ matrix.os }}, ${{ matrix.bla_vendor}} BLA_VENDOR | |
| runs-on: ${{ matrix.os }}-latest | |
| needs: build-sdist | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - 'ubuntu' | |
| - 'macos' | |
| python: | |
| - '3.8' | |
| - '3.11' | |
| bla_vendor: [ 'unset' ] | |
| include: | |
| - os: 'ubuntu' | |
| python: '3.11' | |
| bla_vendor: 'Generic' | |
| - os: 'ubuntu' | |
| python: '3.11' | |
| bla_vendor: 'OpenBLAS' | |
| - os: 'macos' | |
| python: '3.11' | |
| bla_vendor: 'Apple' | |
| - os: 'macos' | |
| python: '3.11' | |
| bla_vendor: 'Generic' | |
| - os: 'macos' | |
| python: '3.11' | |
| bla_vendor: 'OpenBLAS' | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| submodules: 'recursive' | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Setup Ubuntu | |
| if: matrix.os == 'ubuntu' | |
| run: | | |
| sudo apt-get -y update | |
| sudo apt-get -y install gfortran cmake --fix-missing | |
| case ${{ matrix.bla_vendor }} in | |
| unset | Generic ) sudo apt-get -y install libblas-dev liblapack-dev ;; | |
| OpenBLAS ) sudo apt-get -y install libopenblas-dev ;; | |
| *) | |
| echo "bla_vendor option ${{ matrix.bla_vendor }} not supported" | |
| exit 1 ;; | |
| esac | |
| - name: Setup macOS | |
| if: matrix.os == 'macos' | |
| run: | | |
| case ${{ matrix.bla_vendor }} in | |
| unset | Generic | Apple ) ;; # Found in system | |
| OpenBLAS ) | |
| brew install openblas | |
| echo "BLAS_ROOT=/usr/local/opt/openblas/" >> $GITHUB_ENV | |
| echo "LAPACK_ROOT=/usr/local/opt/openblas/" >> $GITHUB_ENV | |
| ;; | |
| *) | |
| echo "bla_vendor option ${{ matrix.bla_vendor }} not supported" | |
| exit 1 ;; | |
| esac | |
| echo "FC=gfortran-11" >> $GITHUB_ENV | |
| - name: Build wheel | |
| env: | |
| BLA_VENDOR: ${{ matrix.bla_vendor }} | |
| CMAKE_GENERATOR: Unix Makefiles | |
| run: | | |
| if [[ $BLA_VENDOR = unset ]]; then unset BLA_VENDOR; fi | |
| python -m pip install --upgrade pip | |
| pip wheel -v -w . . | |
| wheeldir=slycot-wheels/${{ matrix.os }}-${{ matrix.python }}-${{ matrix.bla_vendor }} | |
| mkdir -p ${wheeldir} | |
| cp ./slycot*.whl ${wheeldir}/ | |
| - name: Save wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: slycot-wheels | |
| path: slycot-wheels | |
| build-conda: | |
| name: Build conda, ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }}-latest | |
| needs: build-sdist | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - 'ubuntu' | |
| - 'macos' | |
| - 'windows' | |
| python: | |
| # this is not the packaged version, just the version conda-build runs on. | |
| - '3.11' | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| submodules: 'recursive' | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| activate-environment: build-env | |
| environment-file: .github/conda-env/build-env.yml | |
| miniforge-version: latest | |
| miniforge-variant: Mambaforge | |
| channel-priority: strict | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| - name: Conda build | |
| shell: bash -l {0} | |
| run: | | |
| set -e | |
| conda mambabuild conda-recipe | |
| # preserve directory structure for custom conda channel | |
| find "${CONDA_PREFIX}/conda-bld" -maxdepth 2 -name 'slycot*.tar.bz2' | while read -r conda_pkg; do | |
| conda_platform=$(basename $(dirname "${conda_pkg}")) | |
| mkdir -p "slycot-conda-pkgs/${conda_platform}" | |
| cp "${conda_pkg}" "slycot-conda-pkgs/${conda_platform}/" | |
| done | |
| conda index --no-progress ./slycot-conda-pkgs | |
| - name: Save to local conda pkg channel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: slycot-conda-pkgs | |
| path: slycot-conda-pkgs | |
| create-wheel-test-matrix: | |
| name: Create wheel test matrix | |
| runs-on: ubuntu-latest | |
| needs: build-pip | |
| if: always() # run tests for all successful builds, even if others failed | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| - name: Download wheels (if any) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: slycot-wheels | |
| path: slycot-wheels | |
| - id: set-matrix | |
| run: echo "matrix=$(python3 .github/scripts/set-pip-test-matrix.py)" >> $GITHUB_OUTPUT | |
| create-conda-test-matrix: | |
| name: Create conda test matrix | |
| runs-on: ubuntu-latest | |
| needs: build-conda | |
| if: always() # run tests for all successful builds, even if others failed | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| - name: Download conda packages | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: slycot-conda-pkgs | |
| path: slycot-conda-pkgs | |
| - id: set-matrix | |
| run: echo "matrix=$(python3 .github/scripts/set-conda-test-matrix.py)" >> $GITHUB_OUTPUT | |
| test-wheel: | |
| name: Test wheel ${{ matrix.packagekey }}, ${{matrix.blas_lib}} BLAS lib ${{ matrix.failok }} | |
| needs: create-wheel-test-matrix | |
| runs-on: ${{ matrix.os }}-latest | |
| continue-on-error: ${{ matrix.failok == 'FAILOK' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJSON(needs.create-wheel-test-matrix.outputs.matrix) }} | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| with: | |
| path: slycot-src | |
| - name: Checkout python-control | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'python-control/python-control' | |
| path: python-control | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Setup Ubuntu | |
| if: matrix.os == 'ubuntu' | |
| run: | | |
| set -xe | |
| sudo apt-get -y update | |
| case ${{ matrix.blas_lib }} in | |
| Generic ) sudo apt-get -y install libblas3 liblapack3 ;; | |
| unset | OpenBLAS ) sudo apt-get -y install libopenblas-base ;; | |
| *) | |
| echo "BLAS ${{ matrix.blas_lib }} not supported for wheels on Ubuntu" | |
| exit 1 ;; | |
| esac | |
| update-alternatives --display libblas.so.3-x86_64-linux-gnu | |
| update-alternatives --display liblapack.so.3-x86_64-linux-gnu | |
| - name: Setup macOS | |
| if: matrix.os == 'macos' | |
| run: | | |
| set -xe | |
| brew install coreutils | |
| case ${{ matrix.blas_lib }} in | |
| unset | Generic | Apple ) ;; # system provided (Uses Apple Accelerate Framework) | |
| OpenBLAS ) | |
| brew install openblas | |
| echo "DYLIB_LIBRARY_PATH=/usr/local/opt/openblas/lib" >> $GITHUB_ENV | |
| ;; | |
| *) | |
| echo "BLAS option ${{ matrix.blas_lib }} not supported for wheels on MacOS" | |
| exit 1 ;; | |
| esac | |
| - name: Download wheels | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: slycot-wheels | |
| path: slycot-wheels | |
| - name: Install Wheel | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install matplotlib scipy pytest pytest-cov pytest-timeout coverage coveralls | |
| pip install slycot-wheels/${{ matrix.packagekey }}/slycot*.whl | |
| pip show slycot | |
| - name: Slycot and python-control tests | |
| run: JOBNAME="$JOBNAME" bash slycot-src/.github/scripts/run-tests.sh | |
| env: | |
| JOBNAME: wheel ${{ matrix.packagekey }} ${{ matrix.blas_lib }} | |
| - name: report coverage | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: wheel-${{ matrix.packagekey }}-${{matrix.blas_lib}} | |
| COVERALLS_PARALLEL: true | |
| working-directory: slycot-src | |
| # https://github.com/TheKevJames/coveralls-python/issues/252 | |
| run: coveralls --service=github | |
| test-conda: | |
| name: Test conda ${{ matrix.packagekey }}, ${{matrix.blas_lib}} BLAS lib ${{ matrix.failok }} | |
| needs: create-conda-test-matrix | |
| runs-on: ${{ matrix.os }}-latest | |
| continue-on-error: ${{ matrix.failok == 'FAILOK' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJSON(needs.create-conda-test-matrix.outputs.matrix) }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout Slycot | |
| uses: actions/checkout@v3 | |
| with: | |
| path: slycot-src | |
| - name: Checkout python-control | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: 'python-control/python-control' | |
| path: python-control | |
| - name: Setup macOS | |
| if: matrix.os == 'macos' | |
| run: brew install coreutils | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| miniforge-version: latest | |
| miniforge-variant: Mambaforge | |
| activate-environment: test-env | |
| environment-file: slycot-src/.github/conda-env/test-env.yml | |
| channel-priority: strict | |
| auto-activate-base: false | |
| - name: Download conda packages | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: slycot-conda-pkgs | |
| path: slycot-conda-pkgs | |
| - name: Install Conda package | |
| run: | | |
| set -e | |
| case ${{ matrix.blas_lib }} in | |
| unset ) # the conda-forge default (os dependent) | |
| mamba install libblas libcblas liblapack | |
| ;; | |
| Generic ) | |
| mamba install 'libblas=*=*netlib' 'libcblas=*=*netlib' 'liblapack=*=*netlib' | |
| echo "libblas * *netlib" >> $CONDA_PREFIX/conda-meta/pinned | |
| ;; | |
| OpenBLAS ) | |
| mamba install 'libblas=*=*openblas' openblas | |
| echo "libblas * *openblas" >> $CONDA_PREFIX/conda-meta/pinned | |
| ;; | |
| Intel10_64lp ) | |
| mamba install 'libblas=*=*mkl' mkl | |
| echo "libblas * *mkl" >> $CONDA_PREFIX/conda-meta/pinned | |
| ;; | |
| esac | |
| mamba install -c ./slycot-conda-pkgs slycot | |
| conda list | |
| - name: Slycot and python-control tests | |
| run: JOBNAME="$JOBNAME" bash slycot-src/.github/scripts/run-tests.sh | |
| env: | |
| JOBNAME: conda ${{ matrix.packagekey }} ${{ matrix.blas_lib }} | |
| - name: Report coverage | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: conda-${{ matrix.packagekey }}-${{matrix.blas_lib}} | |
| COVERALLS_PARALLEL: true | |
| working-directory: slycot-src | |
| # https://github.com/TheKevJames/coveralls-python/issues/252 | |
| run: coveralls --service=github | |
| coveralls-final: | |
| name: Finalize parallel coveralls | |
| if: always() | |
| needs: | |
| - test-conda | |
| - test-wheel | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| parallel-finished: true |