Skip to content

Latest commit

 

History

History
118 lines (93 loc) · 4.88 KB

running.md

File metadata and controls

118 lines (93 loc) · 4.88 KB
Raw

Running Horovod

The examples below are for Open MPI. Check your MPI documentation for arguments to the mpirun command on your system.

Typically one GPU will be allocated per process, so if a server has 4 GPUs, you would run 4 processes. In Open MPI, the number of processes is specified with the -np flag.

Starting with the Open MPI 3, it's important to add the -bind-to none and -map-by slot arguments. -bind-to none specifies Open MPI to not bind a training process to a single CPU core (which would hurt performance). -map-by slot allows you to have a mixture of different NUMA configurations because the default behavior is to bind to the socket.

-mca pml ob1 and -mca btl ^openib flags force the use of TCP for MPI communication. This avoids many multiprocessing issues that Open MPI has with RDMA which typically result in segmentation faults. Using TCP for MPI does not have noticeable performance impact since most of the heavy communication is done by NCCL, which will use RDMA via RoCE or InfiniBand if they're available (see Horovod on GPU).

With the -x option you can specify (-x NCCL_DEBUG=INFO) or copy (-x LD_LIBRARY_PATH) an environment variable to all the workers.

  1. To run on a machine with 4 GPUs:
$ mpirun -np 4 \
    -H localhost:4 \
    -bind-to none -map-by slot \
    -x NCCL_DEBUG=INFO -x LD_LIBRARY_PATH -x PATH \
    -mca pml ob1 -mca btl ^openib \
    python train.py
  1. To run on 4 machines with 4 GPUs each:
$ mpirun -np 16 \
    -H server1:4,server2:4,server3:4,server4:4 \
    -bind-to none -map-by slot \
    -x NCCL_DEBUG=INFO -x LD_LIBRARY_PATH -x PATH \
    -mca pml ob1 -mca btl ^openib \
    python train.py

Hangs due to SSH issues

The host where mpirun is executed must be able to SSH to all other hosts without any prompts.

If mpirun hangs without any output, verify that you can ssh to every other server without entering a password or answering questions like this:

The authenticity of host '<hostname> (<ip address>)' can't be established.
RSA key fingerprint is xx:xx:xx:xx:xx:xx:xx:xx:xx:xx:xx:xx:xx:xx:xx:xx.
Are you sure you want to continue connecting (yes/no)?

To learn more about setting up passwordless authentication, see this page.

To avoid The authenticity of host '<hostname> (<ip address>)' can't be established prompts, add all the hosts to the ~/.ssh/known_hosts file using ssh-keyscan:

$ ssh-keyscan -t rsa,dsa server1 server2 > ~/.ssh/known_hosts

Hangs due to non-routed network interfaces

Having network interfaces that are not routed can cause Open MPI to hang. An example of such interface is docker0.

If you see non-routed interfaces (like docker0) in the output of ifconfig, you should tell Open MPI and NCCL to not use them via the -mca btl_tcp_if_exclude <interface>[,<interface>] and NCCL_SOCKET_IFNAME=^<interface> parameters.

$ ifconfig
docker0   Link encap:Ethernet  HWaddr 02:42:2d:17:ea:66
          inet addr:172.17.0.1  Bcast:0.0.0.0  Mask:255.255.0.0
          UP BROADCAST MULTICAST  MTU:1500  Metric:1
          RX packets:0 errors:0 dropped:0 overruns:0 frame:0
          TX packets:0 errors:0 dropped:0 overruns:0 carrier:0
          collisions:0 txqueuelen:0
          RX bytes:0 (0.0 B)  TX bytes:0 (0.0 B)

eth0      Link encap:Ethernet  HWaddr 24:8a:07:b3:7d:8b
          inet addr:10.0.0.1  Bcast:10.0.0.255  Mask:255.255.255.0
          UP BROADCAST RUNNING MULTICAST  MTU:1500  Metric:1
          RX packets:900002410 errors:0 dropped:405 overruns:0 frame:0
          TX packets:1521598641 errors:0 dropped:0 overruns:0 carrier:0
          collisions:0 txqueuelen:1000
          RX bytes:376184431726 (350.3 GiB)  TX bytes:954933846124 (889.3 GiB)

eth1      Link encap:Ethernet  HWaddr 24:8a:07:b3:7d:8a
          inet addr:192.168.0.1  Bcast:192.168.0.255  Mask:255.255.255.0
          UP BROADCAST RUNNING MULTICAST  MTU:1500  Metric:1
          RX packets:2410141 errors:0 dropped:0 overruns:0 frame:0
          TX packets:2312177 errors:0 dropped:0 overruns:0 carrier:0
          collisions:0 txqueuelen:1000
          RX bytes:698398061 (666.0 MiB)  TX bytes:458504418 (437.2 MiB)

lo        Link encap:Local Loopback
          inet addr:127.0.0.1  Mask:255.0.0.0
          inet6 addr: ::1/128 Scope:Host
          UP LOOPBACK RUNNING  MTU:65536  Metric:1
          RX packets:497075633 errors:0 dropped:0 overruns:0 frame:0
          TX packets:497075633 errors:0 dropped:0 overruns:0 carrier:0
          collisions:0 txqueuelen:1
          RX bytes:72680421398 (67.6 GiB)  TX bytes:72680421398 (67.6 GiB)

For example:

$ mpirun -np 16 \
    -H server1:4,server2:4,server3:4,server4:4 \
    -bind-to none -map-by slot \
    -x NCCL_DEBUG=INFO -x LD_LIBRARY_PATH -x PATH \
    -x NCCL_SOCKET_IFNAME=^docker0 \
    -mca pml ob1 -mca btl ^openib \
    -mca btl_tcp_if_exclude lo,docker0 \
    python train.py