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Use --relevel parameter for PCA plotting #222

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qbicStefanC opened this issue Dec 7, 2023 · 1 comment
Open

Use --relevel parameter for PCA plotting #222

qbicStefanC opened this issue Dec 7, 2023 · 1 comment
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enhancement New feature or request

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@qbicStefanC
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Description of feature

The --relevel parameter in rnadeseq is primarily there for modeling in DE analysis ( i assume/recall). I just noticed that it has no influence on the ordering of the sample labels in the PCA plot. Expected behaviour would be that the releveling is also used for releveling of the factor levels in the PCA plot (although not that straightfoward because of the implemented combfactor , which is -in contrast- not used for DE analysis.
@qbicStefanC qbicStefanC added the enhancement New feature or request label Dec 7, 2023
@qbicStefanC
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Leave this open until the next release.

Stefan.

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@qbicStefanC