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Improvement Description
Allow search term parameters (include and exclude) in qiime taxa filter to be specified multiple times. This would more closely match how we handle "multi-inputs" in other parts of the ecosystem, for example the multi-file options to qiime metadata tabulate.
Current Behavior
Multiple search terms are provided as comma-separated text, e.g, --p-exclude mitochondria,chloroplast.
Proposed Behavior
Multiple search terms would be provided by specifying the parameter multiple times, e.g, --p-exclude mitochondria --p-exclude chloroplast
Comments
It probably makes sense to continue supporting comma-separated text for a couple of releases, raising a VisibleDeprecationWarning if a user provides comma-separated text.
The text was updated successfully, but these errors were encountered:
Improvement Description
Allow search term parameters (
include
andexclude
) inqiime taxa filter
to be specified multiple times. This would more closely match how we handle "multi-inputs" in other parts of the ecosystem, for example the multi-file options toqiime metadata tabulate
.Current Behavior
Multiple search terms are provided as comma-separated text, e.g,
--p-exclude mitochondria,chloroplast
.Proposed Behavior
Multiple search terms would be provided by specifying the parameter multiple times, e.g,
--p-exclude mitochondria --p-exclude chloroplast
Comments
VisibleDeprecationWarning
if a user provides comma-separated text.The text was updated successfully, but these errors were encountered: