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barplots: TSV/CSV download should contain relative abundances #97

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nbokulich opened this issue Oct 18, 2017 · 8 comments
Open

barplots: TSV/CSV download should contain relative abundances #97

nbokulich opened this issue Oct 18, 2017 · 8 comments

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@nbokulich
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nbokulich commented Oct 18, 2017

Improvement Description
This would be consistent with what is shown in the barplots and is more useful than absolute counts (e.g., if a user wants to download and generate the same plots outside of QIIME 2).

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Raised in this forum post

@ebolyen
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ebolyen commented Oct 19, 2017

I think this also fits in with the idea of downloading the current view-state as a CSV (I don't think there's an existing issue for that either).

@jairideout
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👍, I think we should support both absolute and relative frequencies

@thermokarst
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This recently came up on the forum.

@qins
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qins commented Aug 8, 2018

This feature is useful. Is there a time table?

@thermokarst
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@qins - no, this is pretty low on our priority list since the relative abundance can be calculated directly from the absolute abundance values. If you need help with this calculation please open a new topic at https://forum.qiime2.org. Thanks!

@qins
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qins commented Aug 9, 2018

I calculated the relative abundance with a script. But many users may want a to-end solution.
Thank you for the reply, and the excellent work :-)

@KatherineXUE
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Why the CSV file downloaded from taxa-bar-plot shows fewer entities than the real sequences? In this case, this table is only part of the feature table. How can we get a complete absolute abundance and a relative abundance (with taxonomy) table?

@nbokulich
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Hi @KatherineXUE please get in touch on the QIIME 2 forum for support questions. Thanks!

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