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Introduction to rEDM: Empirical Dynamics Modeling in R: a crash course

This is a 3 hour-Workshop on EDM and one application to real data in the XLII Congreso Paulo Leal Ferreira organized by the students of the Instituto de Física Teórica - IFT (UNESP)

• Site
• Slack

Slides to the Workshop on Time series analysis by a causation criteria:

• Day 1: Takens Theorem and its consequences
• Day 2: Simplex projection
• Day 3: Real data, Real problems

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This is a series of tutorials for the School on Physics Applications in Biology of 2018, created by Brenno Cabella, Paulo Inácio Prado, Renato Mendes Coutinho, Marina Rillo, Rafael Lopes and Roberto Kraenkel.

0. Installation instructions

1. A Quick Tour through State Space Reconstruction

• Here Download the notebook or the R file.

2. Simplex projection made simple

• Here Download the notebook or the R file.

3. Convergent cross-mapping (CCM)

• Here Download the notebook or the R file.

4. Readings and resources