From 8c2258d3c9abe2ba149a893b335465efa67cb6e5 Mon Sep 17 00:00:00 2001 From: Matthew Richards Date: Thu, 21 Dec 2023 14:23:11 +0000 Subject: [PATCH 1/3] ci: Add job to test that the API can be installed via Pip #467 --- .github/workflows/ci-build.yml | 49 +++++++++++++++++++++++++++++++++- 1 file changed, 48 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci-build.yml b/.github/workflows/ci-build.yml index 105157dc..b4d4903e 100644 --- a/.github/workflows/ci-build.yml +++ b/.github/workflows/ci-build.yml @@ -361,11 +361,58 @@ jobs: - name: Diff SQL dumps run: diff -s ~/generator_script_dump_main.sql ~/generator_script_dump_1.sql + pip-install-testing: + runs-on: ubuntu-20.04 + strategy: + fail-fast: false + matrix: + python-version: ["3.6", "3.7", "3.8", "3.9", "3.10"] + name: Pip Install ${{ matrix.python-version }} Test + steps: + # Checkout DataGateway API and setup Python + - name: Check out repo + uses: actions/checkout@f43a0e5ff2bd294095638e18286ca9a3d1956744 # v3.5.3 + - name: Setup Python + uses: actions/setup-python@61a6322f88396a6271a6ee3565807d608ecaddd1 # v4.7.0 + with: + python-version: ${{ matrix.python-version }} + architecture: x64 + + # Create virtual environment and install DataGateway API + - name: Create and activate virtual environment + run: | + python3 -m venv dg-api-venv + source dg-api-venv/bin/activate + - name: Install DataGateway API via pip + run: pip install . + + # Prep for using the API for tests + - name: Create log file + run: touch logs.log + - name: Configure log file location + run: echo "`yq \ + '.log_location="${GITHUB_WORKSPACE}/logs.log"' datagateway_api/config.yaml.example | envsubst`" > datagateway_api/config.yaml.example + - name: Configure datagateway extension + run: echo "`yq \ + '.datagateway_api.extension="/datagateway_api"' datagateway_api/config.yaml.example`" > datagateway_api/config.yaml.example + - name: Create config.yaml + run: cp datagateway_api/config.yaml.example datagateway_api/config.yaml + # These sections are removed so the API doesn't try to (and fail) to connect to an ICAT stack on startup + - name: Remove DataGateway API and Search API sections from config + run: yq -i 'del(.datagateway_api, .search_api)' datagateway_api/config.yaml + - name: Create search_api_mapping.json + run: cp datagateway_api/search_api_mapping.json.example datagateway_api/search_api_mapping.json + + # Launch API to see if it starts correctly or has a startup issue + # Code logic used from https://stackoverflow.com/a/63643845 + - name: Start API + run: timeout 10 python -m datagateway_api.src.main || code=$?; if [[ $code -ne 124 && $code -ne 0 ]]; then exit $code; fi + docker: # This job triggers only if all the other jobs succeed and does different things depending on the context. # The job builds the Docker image in all cases and also pushes the image to Harbor only if something is # pushed to the main branch. - needs: [tests, linting, formatting, safety, generator-script-testing] + needs: [tests, linting, formatting, safety, generator-script-testing, pip-install-testing] name: Docker runs-on: ubuntu-20.04 steps: From 50dd13cdde39fbddd04a2504578d3ecf57cb5f33 Mon Sep 17 00:00:00 2001 From: Matthew Richards Date: Thu, 21 Dec 2023 14:25:56 +0000 Subject: [PATCH 2/3] fix: Pin Flask to 2.0.3 in `pyproject.toml` #467 - This will ensure this version is used when the API is installed via Pip --- poetry.lock | 567 +++++++++++++++++++++++++------------------------ pyproject.toml | 1 + 2 files changed, 296 insertions(+), 272 deletions(-) diff --git a/poetry.lock b/poetry.lock index 37d74216..4397d926 100644 --- a/poetry.lock +++ b/poetry.lock @@ -114,7 +114,7 @@ python-versions = "~=3.5" [[package]] name = "certifi" -version = "2023.7.22" +version = "2023.11.17" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -201,7 +201,7 @@ packaging = ">=20.4" [[package]] name = "cryptography" -version = "39.0.1" +version = "40.0.2" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." category = "dev" optional = false @@ -213,10 +213,10 @@ cffi = ">=1.12" [package.extras] docs = ["sphinx (>=5.3.0)", "sphinx-rtd-theme (>=1.1.1)"] docstest = ["pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"] -pep8test = ["black", "check-manifest", "mypy", "ruff", "types-pytz", "types-requests"] +pep8test = ["black", "check-manifest", "mypy", "ruff"] sdist = ["setuptools-rust (>=0.11.4)"] ssh = ["bcrypt (>=3.1.5)"] -test = ["hypothesis (>=1.11.4,!=3.79.2)", "iso8601", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-shard (>=0.1.2)", "pytest-subtests", "pytest-xdist", "pytz"] +test = ["iso8601", "pretend", "pytest (>=6.2.0)", "pytest-benchmark", "pytest-cov", "pytest-shard (>=0.1.2)", "pytest-subtests", "pytest-xdist"] test-randomorder = ["pytest-randomly"] tox = ["tox"] @@ -246,19 +246,19 @@ python-versions = ">=3.5,<4.0" [[package]] name = "dparse" -version = "0.6.2" +version = "0.6.3" description = "A parser for Python dependency files" category = "dev" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" [package.dependencies] packaging = "*" -toml = "*" +tomli = {version = "*", markers = "python_version < \"3.11\""} [package.extras] conda = ["pyyaml"] -pipenv = ["pipenv"] +pipenv = ["pipenv (<=2022.12.19)"] [[package]] name = "faker" @@ -438,7 +438,7 @@ Six = "*" [[package]] name = "flask-restful" -version = "0.3.9" +version = "0.3.10" description = "Simple framework for creating REST APIs" category = "main" optional = false @@ -513,7 +513,7 @@ test = ["objgraph", "psutil"] [[package]] name = "icdiff" -version = "2.0.6" +version = "2.0.7" description = "improved colored diff" category = "dev" optional = false @@ -521,7 +521,7 @@ python-versions = "*" [[package]] name = "idna" -version = "3.4" +version = "3.6" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false @@ -569,11 +569,11 @@ python-versions = "*" [[package]] name = "invoke" -version = "1.7.3" +version = "2.2.0" description = "Pythonic task execution" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "itsdangerous" @@ -664,7 +664,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" [[package]] name = "pbr" -version = "5.11.1" +version = "6.0.0" description = "Python Build Reasonableness" category = "dev" optional = false @@ -913,7 +913,7 @@ suds = "*" [[package]] name = "python-semantic-release" -version = "7.33.1" +version = "7.34.6" description = "Automatic Semantic Versioning for Python projects" category = "dev" optional = false @@ -925,7 +925,7 @@ click-log = ">=0.3,<1" dataclasses = {version = "0.8", markers = "python_version < \"3.7.0\""} dotty-dict = ">=1.3.0,<2" gitpython = ">=3.0.8,<4" -invoke = ">=1.4.1,<2" +invoke = ">=1.4.1,<3" packaging = "*" python-gitlab = ">=2,<4" requests = ">=2.25,<3" @@ -935,13 +935,13 @@ twine = ">=3,<4" [package.extras] dev = ["black", "isort", "tox"] -docs = ["Jinja2 (==3.0.3)", "Sphinx (==1.3.6)"] +docs = ["Jinja2 (==3.0.3)", "Sphinx (==1.8.6)"] mypy = ["mypy", "types-requests"] test = ["coverage (>=5,<6)", "mock (==1.3.0)", "pytest (>=7,<8)", "pytest-mock (>=2,<3)", "pytest-xdist (>=1,<2)", "responses (==0.13.3)"] [[package]] name = "pytz" -version = "2022.7.1" +version = "2023.3.post1" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -949,11 +949,11 @@ python-versions = "*" [[package]] name = "pywin32-ctypes" -version = "0.2.0" -description = "" +version = "0.2.2" +description = "A (partial) reimplementation of pywin32 using ctypes/cffi" category = "dev" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "pyyaml" @@ -981,7 +981,7 @@ md = ["cmarkgfm (>=0.8.0)"] [[package]] name = "regex" -version = "2022.10.31" +version = "2023.8.8" description = "Alternative regular expression module, to replace re." category = "dev" optional = false @@ -1007,7 +1007,7 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "requests-toolbelt" -version = "0.10.1" +version = "1.0.0" description = "A utility belt for advanced users of python-requests" category = "dev" optional = false @@ -1029,26 +1029,26 @@ idna2008 = ["idna"] [[package]] name = "ruamel.yaml" -version = "0.17.21" +version = "0.18.3" description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order" category = "dev" optional = false python-versions = ">=3" [package.dependencies] -"ruamel.yaml.clib" = {version = ">=0.2.6", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.11\""} +"ruamel.yaml.clib" = {version = ">=0.2.7", markers = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""} 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