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@ramachandran-lab

Ramachandran Lab

The Ramachandran Lab at Brown University

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  1. pong pong Public

    Fast analysis and visualization of latent clusters in population genetic data

    Python 68 12

  2. SWIFr SWIFr Public

    Sweep Inference Framework (controlling for correlation)

    OpenEdge ABL 29 4

  3. genee genee Public

    An Association Test for Aggregated Sets of SNP-Level Summary Statistics

    R 7 1

  4. ESNN ESNN Public

    Code and simulations using an Ensemble of Single-Effect Neural Networks (ESNN)

    Python 5 1

  5. PEGASUS PEGASUS Public

    Scripts and references files for PEGASUS software for calculating gene-level p-values from GWA p-values

    Perl 4 2

  6. PEGASUS-WINGS PEGASUS-WINGS Public

    MATLAB 4 1

Repositories

Showing 10 of 19 repositories
  • ML-MAGES Public

    ML-MAGES: Machine learning approaches for multivariate genetic association analyses with genes and effect size shrinkage

    ramachandran-lab/ML-MAGES’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 30, 2024
  • SWIFr Public

    Sweep Inference Framework (controlling for correlation)

    ramachandran-lab/SWIFr’s past year of commit activity
    OpenEdge ABL 29 GPL-3.0 4 1 27 Updated Jul 10, 2024
  • multiancestry_enrichment Public

    Example code and scripts for Smith et al. 2022

    ramachandran-lab/multiancestry_enrichment’s past year of commit activity
    OpenEdge ABL 2 CC0-1.0 0 0 0 Updated May 6, 2024
  • archaic-chrX-sexbias Public

    Code and data to reproduce main figures and simulations of Chevy, Huerta-Sanchez, and Ramachandran, 202X

    ramachandran-lab/archaic-chrX-sexbias’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Apr 30, 2024
  • resources Public

    Best practices and scientific resources

    ramachandran-lab/resources’s past year of commit activity
    0 0 0 0 Updated Feb 24, 2023
  • SRS_paper Public
    ramachandran-lab/SRS_paper’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 15, 2022
  • ESNN Public

    Code and simulations using an Ensemble of Single-Effect Neural Networks (ESNN)

    ramachandran-lab/ESNN’s past year of commit activity
    Python 5 MIT 1 0 0 Updated Nov 11, 2022
  • deceptive_deeppath Public
    ramachandran-lab/deceptive_deeppath’s past year of commit activity
    Python 0 0 0 0 Updated Jun 22, 2022
  • pong Public

    Fast analysis and visualization of latent clusters in population genetic data

    ramachandran-lab/pong’s past year of commit activity
    Python 68 12 0 1 Updated Mar 29, 2022
  • UPD_Detector Public

    code and classifier parameters for ROH-based UPD detection

    ramachandran-lab/UPD_Detector’s past year of commit activity
    R 1 0 0 0 Updated Jan 26, 2021
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