Example code and scripts for Smith et al. 2022
For additional result files or questions please email samuel.smith@utexas.edu
Softwares:
plink 1.90 and 2.0 - https://www.cog-genomics.org/plink/
gene-e regional association test - https://github.com/ramachandran-lab/genee
Hierarchical HotNet - https://github.com/raphael-group/hierarchical-hotnet
Figure Generation Scripts are available in the figure_scripts directory
Example code for gene-level analyses as well as Hierarchical HotNet analyses are in the examples/ directory
Summary statistics from the Biobank Japan are availablt at http://jenger.riken.jp/en/