{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":639715601,"defaultBranch":"main","name":"mitonuclear-sd","ownerLogin":"raqmejtru","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-05-12T04:18:06.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/89813691?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1683926058.1153522","currentOid":""},"activityList":{"items":[{"before":"82ae1f4f6db8ab440340c32ae708e3ee16d982ee","after":"3e47e435885185aa283cf1734a8f21698bbedb24","ref":"refs/heads/main","pushedAt":"2023-10-01T17:42:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"revised figures","shortMessageHtmlLink":"revised figures"}},{"before":"6b3fbd956b7cc051e1502c9cda0635c047664b64","after":"82ae1f4f6db8ab440340c32ae708e3ee16d982ee","ref":"refs/heads/main","pushedAt":"2023-09-30T19:42:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"9e1ce6f8c22fcdc40a5a5986148a952b8e527e10","after":"6b3fbd956b7cc051e1502c9cda0635c047664b64","ref":"refs/heads/main","pushedAt":"2023-06-22T21:05:15.823Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"Add KEGG annotations, rm F-19/F-20 dup, update fig","shortMessageHtmlLink":"Add KEGG annotations, rm F-19/F-20 dup, update fig"}},{"before":"90a42caece9b002abda6d886cf7c0182495ddf71","after":"9e1ce6f8c22fcdc40a5a5986148a952b8e527e10","ref":"refs/heads/main","pushedAt":"2023-06-17T22:34:59.413Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"species name","shortMessageHtmlLink":"species name"}},{"before":"c6ebd99d946390dc83cfa487ae42ed61af75eaa5","after":"90a42caece9b002abda6d886cf7c0182495ddf71","ref":"refs/heads/main","pushedAt":"2023-06-17T22:34:01.278Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"hallmark pathways","shortMessageHtmlLink":"hallmark pathways"}},{"before":"7e9df62fcf9faa201f06dbe54661ee71d93be521","after":"c6ebd99d946390dc83cfa487ae42ed61af75eaa5","ref":"refs/heads/main","pushedAt":"2023-06-17T22:32:29.435Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"12ffdf94e2d45fef4a3f73d00875eb83a2b0f21d","after":"7e9df62fcf9faa201f06dbe54661ee71d93be521","ref":"refs/heads/main","pushedAt":"2023-06-17T22:21:19.362Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":"c20492673cf0bf3f00545402bde9159154516c23","after":"12ffdf94e2d45fef4a3f73d00875eb83a2b0f21d","ref":"refs/heads/main","pushedAt":"2023-06-17T22:17:54.896Z","pushType":"push","commitsCount":2,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"Push readme","shortMessageHtmlLink":"Push readme"}},{"before":"9bd1e266093736e49a4da9ecdb89177ff16c9bb6","after":"c20492673cf0bf3f00545402bde9159154516c23","ref":"refs/heads/main","pushedAt":"2023-05-18T01:22:45.490Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"AlphaPulldown: update README","shortMessageHtmlLink":"AlphaPulldown: update README"}},{"before":"a741f49eb1d79ca0ed701197c86a9347c88f0393","after":"9bd1e266093736e49a4da9ecdb89177ff16c9bb6","ref":"refs/heads/main","pushedAt":"2023-05-18T01:21:31.228Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"AlphaPulldown: update README","shortMessageHtmlLink":"AlphaPulldown: update README"}},{"before":"1adbdf90d78650e18621ec97871cb0e368dfe10b","after":"a741f49eb1d79ca0ed701197c86a9347c88f0393","ref":"refs/heads/main","pushedAt":"2023-05-14T17:55:39.474Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"subfigures used in manuscript","shortMessageHtmlLink":"subfigures used in manuscript"}},{"before":"2f51858d71cb771720fdbccd856b888432e16780","after":"1adbdf90d78650e18621ec97871cb0e368dfe10b","ref":"refs/heads/main","pushedAt":"2023-05-14T17:53:33.555Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"Analysis workflow","shortMessageHtmlLink":"Analysis workflow"}},{"before":"3eae1a2aacbbc28fedb5b31779e73d7ef15c6251","after":"2f51858d71cb771720fdbccd856b888432e16780","ref":"refs/heads/main","pushedAt":"2023-05-14T17:52:13.529Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: quotation bug","shortMessageHtmlLink":"sncRNA: quotation bug"}},{"before":"18a9ad837d3c086ca65387aa81bc008a5bb0b30f","after":"3eae1a2aacbbc28fedb5b31779e73d7ef15c6251","ref":"refs/heads/main","pushedAt":"2023-05-14T01:15:42.163Z","pushType":"push","commitsCount":2,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"WGCNA: downstream analyses","shortMessageHtmlLink":"WGCNA: downstream analyses"}},{"before":"601640ac21a8e469148a00b5d8adfe10862e858c","after":"18a9ad837d3c086ca65387aa81bc008a5bb0b30f","ref":"refs/heads/main","pushedAt":"2023-05-14T01:01:19.929Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"DE: downstream analyses","shortMessageHtmlLink":"DE: downstream analyses"}},{"before":"0c845d1ab021195aafdcbf7bb0d7d4cd364354b0","after":"601640ac21a8e469148a00b5d8adfe10862e858c","ref":"refs/heads/main","pushedAt":"2023-05-14T00:28:31.599Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"DE: move sample_info","shortMessageHtmlLink":"DE: move sample_info"}},{"before":"97c50dad8c3959a7e55d52c65723c5cb704ab3a5","after":"0c845d1ab021195aafdcbf7bb0d7d4cd364354b0","ref":"refs/heads/main","pushedAt":"2023-05-14T00:27:56.274Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"WGCNA: script, outputs","shortMessageHtmlLink":"WGCNA: script, outputs"}},{"before":"2848845055f4961eaa78edbe312e6cfa839bff17","after":"97c50dad8c3959a7e55d52c65723c5cb704ab3a5","ref":"refs/heads/main","pushedAt":"2023-05-13T23:59:37.554Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"DE: script, outputs","shortMessageHtmlLink":"DE: script, outputs"}},{"before":"5fdc3e3992a5be2c0942d92c363ea4a863250509","after":"2848845055f4961eaa78edbe312e6cfa839bff17","ref":"refs/heads/main","pushedAt":"2023-05-13T23:48:46.770Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: get all sncRNA targets","shortMessageHtmlLink":"sncRNA: get all sncRNA targets"}},{"before":"82e80ad41963a9bc9659ed313fb43494b3173451","after":"5fdc3e3992a5be2c0942d92c363ea4a863250509","ref":"refs/heads/main","pushedAt":"2023-05-13T23:30:00.309Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: fix formatting","shortMessageHtmlLink":"sncRNA: fix formatting"}},{"before":"4937f0eb504150d115a5a40faaa3666a0fe67b44","after":"82e80ad41963a9bc9659ed313fb43494b3173451","ref":"refs/heads/main","pushedAt":"2023-05-13T23:28:52.296Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: to make input for filter_by_coverage.R","shortMessageHtmlLink":"sncRNA: to make input for filter_by_coverage.R"}},{"before":"2d67a00d929d49d4869ec02fa84981cb2c88f6dc","after":"4937f0eb504150d115a5a40faaa3666a0fe67b44","ref":"refs/heads/main","pushedAt":"2023-05-13T23:16:59.906Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: clean comments","shortMessageHtmlLink":"sncRNA: clean comments"}},{"before":"c92c35c71e43fd86c452a28b040b8cd667ede36b","after":"2d67a00d929d49d4869ec02fa84981cb2c88f6dc","ref":"refs/heads/main","pushedAt":"2023-05-13T23:14:39.337Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: used to make F GTF","shortMessageHtmlLink":"sncRNA: used to make F GTF"}},{"before":"fcbd11e75ea38ffa11d028345262ddeedba4b1dd","after":"c92c35c71e43fd86c452a28b040b8cd667ede36b","ref":"refs/heads/main","pushedAt":"2023-05-13T22:53:12.040Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: maps mt-sncRNA to mitogenomes , heatmap","shortMessageHtmlLink":"sncRNA: maps mt-sncRNA to mitogenomes , heatmap"}},{"before":"e3e56028bbe1d04a714c6a68153c35569c564af9","after":"fcbd11e75ea38ffa11d028345262ddeedba4b1dd","ref":"refs/heads/main","pushedAt":"2023-05-13T18:05:31.592Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: rm incompletely filtered mt-sncRNAs","shortMessageHtmlLink":"sncRNA: rm incompletely filtered mt-sncRNAs"}},{"before":"c45ea61531565d74663c26c8accbc00d5351ac2f","after":"e3e56028bbe1d04a714c6a68153c35569c564af9","ref":"refs/heads/main","pushedAt":"2023-05-13T18:01:12.111Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: Remove 2 F mt-sncRNAs, failed RNAUp","shortMessageHtmlLink":"sncRNA: Remove 2 F mt-sncRNAs, failed RNAUp"}},{"before":"6e3f922dc3f496e71b52d5f36d0d1ade72b078f9","after":"c45ea61531565d74663c26c8accbc00d5351ac2f","ref":"refs/heads/main","pushedAt":"2023-05-13T17:19:19.616Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: rename read mapping directories","shortMessageHtmlLink":"sncRNA: rename read mapping directories"}},{"before":"9cc5716eac72ecfa3045a7e953747a83ae7205bf","after":"6e3f922dc3f496e71b52d5f36d0d1ade72b078f9","ref":"refs/heads/main","pushedAt":"2023-05-13T17:13:38.540Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: Filter by coverage (& RNAUp)","shortMessageHtmlLink":"sncRNA: Filter by coverage (& RNAUp)"}},{"before":"f87b59e43c699d6366c635b08213de63a2fd1bd2","after":"9cc5716eac72ecfa3045a7e953747a83ae7205bf","ref":"refs/heads/main","pushedAt":"2023-05-13T16:33:18.787Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: Read mapping files (bam, gtf, sample info)","shortMessageHtmlLink":"sncRNA: Read mapping files (bam, gtf, sample info)"}},{"before":"fd81a5e3e3e3c3594e61561153a428cf55b5e953","after":"f87b59e43c699d6366c635b08213de63a2fd1bd2","ref":"refs/heads/main","pushedAt":"2023-05-13T16:31:52.220Z","pushType":"push","commitsCount":1,"pusher":{"login":"raqmejtru","name":"Raquel Mejia-Trujillo","path":"/raqmejtru","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89813691?s=80&v=4"},"commit":{"message":"sncRNA: Raw base coverage files","shortMessageHtmlLink":"sncRNA: Raw base coverage files"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADjOW1QgA","startCursor":null,"endCursor":null}},"title":"Activity ยท raqmejtru/mitonuclear-sd"}