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@rat-genome-database

Rat Genome Database

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  1. rgd-core-library rgd-core-library Public

    Domain layer and shared components

    Java

  2. rgd-web-application rgd-web-application Public

    Code used by the RGD web site and tools

    JavaScript 1

  3. rgd-web-services rgd-web-services Public

    Swagger implementation

    Java

  4. rgd-annotation-files rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

Repositories

Showing 10 of 142 repositories
  • rgd-annotation-files Public

    GO annotation files in GAF, GPAD and GPI format

    rat-genome-database/rgd-annotation-files’s past year of commit activity
    0 GPL-3.0 0 1 0 Updated Nov 9, 2024
  • alliance-submission-pipeline Public

    Generate and submit files for rat and human to the Alliance (https://www.alliancegenome.org/)

    rat-genome-database/alliance-submission-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 8, 2024
  • eva-pipeline Public

    Load variants from EVA for Rat, Dog, Green Monkey, Mouse, and Pig.

    rat-genome-database/eva-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 8, 2024
  • synteny-load-pipeline Public

    Pipeline to create synteny blocks for all species

    rat-genome-database/synteny-load-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 8, 2024
  • rgd-web-application Public

    Code used by the RGD web site and tools

    rat-genome-database/rgd-web-application’s past year of commit activity
    JavaScript 1 GPL-3.0 0 0 0 Updated Nov 8, 2024
  • marker-load-pipeline Public

    Load the marker data for new assembly

    rat-genome-database/marker-load-pipeline’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 7, 2024
  • gff3-pipeline Public

    Creates gff3 files to be loaded into RGD JBrowse instance.

    rat-genome-database/gff3-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 5, 2024
  • static-site-content Public
    rat-genome-database/static-site-content’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Nov 4, 2024
  • variant-load-pipeline Public

    Load rat strain data from VCF files into RGD database and precomputes data for use by Variant Visualizer tool

    rat-genome-database/variant-load-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Nov 4, 2024
  • hgnc-pipeline Public

    Handles obsolete HGNC IDs for human genes.

    rat-genome-database/hgnc-pipeline’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Oct 31, 2024
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