Data used during the workshop 🎓 Data Toolbox for Reproducible Research in Ecology co-organized by the FRB-CESAB and the GdR EcoStat.
PanTHERIA 🌐
PanTHERIA is a species-level database of life history, ecology, and geography of
extant and recently extinct mammals. The dataset can be found in
data/pantheria/PanTHERIA_1-0_WR05_Aug2008.txt. Metadata can be found here.
Missing values are coded -999.
Citation: Kate EJ, Bielby J, Cardillo M et al. (2009) PanTHERIA: A species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology, 90, 2648. DOI: 10.1890/08-1494.1.
WWF Wildfinder 🌐
The WWF WildFinder database contains presence/absence data for the world's terrestrial amphibians, reptiles, birds, and mammals, by terrestrial ecoregion. In this repository, only 4,936 mammals species are provided. Data have cleaned and are structured in three csv files:
data/wildfinder/wildfinder-mammals_list.csv: list of 4,936 World mammals species;data/wildfinder/wildfinder-ecoregions_list.csv: list of the 798 world terrestrial ecoregions defined by the WWF;data/wildfinder/wildfinder-ecoregions_species.csv: association between species and ecoregions.
Citation: World Wildlife Fund (2006) WildFinder: Online database of species distributions. Version Jan-06. URL: https://www.worldwildlife.org/publications/wildfinder-database.
Casajus N, Bonnici I, Dray S, Gimenez O, Guéry L, Guilhaumon F, Schiettekatte NMD & Siberchicot A (2023) Workshop FRB-CESAB & GdR EcoStat: Reproducible Research in Computational Ecology. Zenodo. http://doi.org/10.5281/zenodo.4262978.