diff --git a/README.md b/README.md index 5644986..c88dfe9 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,27 @@ This processor takes as input a stream non SDS entities (members) and wrap them This processor takes as input a stream of SDS records and SDS metadata and proceeds to _bucketize_ them according to a predefined strategy ([see example](https://github.com/ajuvercr/sds-processors/blob/master/bucketizeStrategy.ttl)). The SDS metadata will be also transformed to reflect this transformation. Multiple SDS streams can be present on the incoming data channel. -This processor relies on the bucketizer implementations available in the [TREEcg/bucketizers](https://github.com/TREEcg/bucketizers) repository. +You can define bucketizers as follows: + +```turtle + a js:Bucketize; + js:channels [ + js:dataInput <...data input>; + js:metadataInput <... metadata input>; + js:dataOutput <... data output>; + js:metadataOutput <... metadata output>; + ]; + js:bucketizeStrategy ( [ # One or more bucketize strategies + a tree:SubjectFragmentation; # Create a bucket based on this path + tree:fragmentationPath ( ); + ] [ + a tree:PageFragmentation; # Create a new bucket when the previous bucket has 2 members + tree:pageSize 2; + ] ); + js:savePath <./buckets_save.json>; + js:outputStreamId . +``` + ### [`js:Ldesify`](https://github.com/ajuvercr/sds-processors/blob/master/configs/ldesify.ttl#L10) diff --git a/configs/bucketizer.ttl b/configs/bucketizer.ttl index 690c3d6..ce7fbab 100644 --- a/configs/bucketizer.ttl +++ b/configs/bucketizer.ttl @@ -1,3 +1,5 @@ +@prefix tree: . +@prefix rdfl: . @prefix js: . @prefix fno: . @prefix fnom: . @@ -7,88 +9,118 @@ @prefix owl: . @prefix dc: . +<> owl:imports <./bucketizer_configs.ttl>. js:Bucketize a js:JsProcess; dc:title "Bucketizer processor"; dc:description "This bucketizer processor is a SDS processor. It takes in SDS records and SDS metadata and bucketizes the incoming records according to some bucketize strategy. The metadata is also transformed to reflect this transformation. Many SDS streams can be present on the incoming data channel, please specify what stream to ingest and what stream to produce."; - js:file <../lib/main.js>; - js:function "doTheBucketization"; + js:file <../src/bucketizers.ts>; + js:function "bucketize"; js:location <../>; js:mapping [ a fno:Mapping; fno:parameterMapping [ a fnom:PositionParameterMapping; - fnom:functionParameter "Data input channel"; + fnom:functionParameter "channels"; fnom:implementationParameterPosition "0"^^xsd:int; ], [ a fnom:PositionParameterMapping; - fnom:functionParameter "Metadata input channel"; + fnom:functionParameter "Bucketization strategy"; fnom:implementationParameterPosition "1"^^xsd:int; - ], [ - a fnom:PositionParameterMapping; - fnom:functionParameter "Data output channel"; - fnom:implementationParameterPosition "2"^^xsd:int; - ], [ - a fnom:PositionParameterMapping; - fnom:functionParameter "Metadata output channel"; - fnom:implementationParameterPosition "3"^^xsd:int; - ], [ - a fnom:PositionParameterMapping; - fnom:functionParameter "Location of bucketization strategy file"; - fnom:implementationParameterPosition "4"^^xsd:int; ], [ a fnom:PositionParameterMapping; fnom:functionParameter "Path to use to save state files"; - fnom:implementationParameterPosition "5"^^xsd:int; + fnom:implementationParameterPosition "2"^^xsd:int; ], [ a fnom:PositionParameterMapping; fnom:functionParameter "ID of Stream to transform"; - fnom:implementationParameterPosition "6"^^xsd:int; + fnom:implementationParameterPosition "3"^^xsd:int; ], [ a fnom:PositionParameterMapping; fnom:functionParameter "ID of Stream to produce"; - fnom:implementationParameterPosition "7"^^xsd:int; + fnom:implementationParameterPosition "4"^^xsd:int; ]; ]. [ ] a sh:NodeShape; - sh:targetClass js:Bucketize; + sh:targetClass ; sh:property [ sh:class :ReaderChannel; sh:path js:dataInput; - sh:name "Data input channel"; + sh:name "dataInput"; sh:minCount 1; sh:maxCount 1; ], [ sh:class :ReaderChannel; sh:path js:metadataInput; - sh:name "Metadata input channel"; + sh:name "metadataInput"; sh:minCount 1; sh:maxCount 1; ], [ sh:class :WriterChannel; sh:path js:dataOutput; - sh:name "Data output channel"; + sh:name "dataOutput"; sh:minCount 1; sh:maxCount 1; ], [ sh:class :WriterChannel; sh:path js:metadataOutput; - sh:name "Metadata output channel"; + sh:name "metadataOutput"; sh:minCount 1; sh:maxCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass ; + sh:property [ + sh:name "id"; + sh:path ( ); + sh:maxCount 1; + sh:minCount 1; + sh:datatype xsd:iri; ], [ - sh:datatype xsd:string; + sh:name "quads"; + sh:path ( ); + sh:maxCount 1; + sh:minCount 1; + sh:class rdfl:CBD; + ]. + +[ ] a sh:NodeShape; + sh:targetClass ; + sh:property [ + sh:class tree:FragmentationStrategy; + sh:path ( ); + sh:name "strategy"; + sh:minCount 1; + ], [ + sh:class ; + sh:path ( ); + sh:name "quads"; + sh:minCount 1; + sh:maxCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass js:Bucketize; + sh:property [ + sh:class ; + sh:path js:channels; + sh:name "channels"; + sh:minCount 1; + sh:maxCount 1; + ], [ + sh:class ; sh:path js:bucketizeStrategy; - sh:name "Location of bucketization strategy file"; + sh:name "Bucketization strategy"; sh:minCount 1; sh:maxCount 1; ], [ - sh:datatype xsd:string; + sh:datatype xsd:iri; sh:path js:inputStreamId; sh:name "ID of Stream to transform"; sh:maxCount 1; ], [ - sh:datatype xsd:string; + sh:datatype xsd:iri; sh:path js:outputStreamId; sh:name "ID of Stream to produce"; sh:minCount 1; diff --git a/configs/bucketizer_configs.ttl b/configs/bucketizer_configs.ttl new file mode 100644 index 0000000..a4d4ae7 --- /dev/null +++ b/configs/bucketizer_configs.ttl @@ -0,0 +1,91 @@ +@prefix tree: . +@prefix rdf: . +@prefix rdfs: . +@prefix sds: . +@prefix sh: . +@prefix xsd: . +@prefix rdfl: . + +[ ] a sh:NodeShape; + sh:targetClass tree:FragmentationStrategy; + sh:property [ + sh:name "type"; + sh:path rdf:type; + sh:datatype xsd:iri; + sh:maxCount 1; + sh:minCount 1; + ], [ + sh:name "config"; + sh:path ( ); + sh:class rdfl:TypedExtract; + sh:maxCount 1; + sh:minCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass ; + sh:property [ + sh:name "id"; + sh:path ( ); + sh:maxCount 1; + sh:minCount 1; + sh:datatype xsd:iri; + ], [ + sh:name "quads"; + sh:path ( ); + sh:maxCount 1; + sh:minCount 1; + sh:class rdfl:CBD; + ]. + +[ ] a sh:NodeShape; + sh:targetClass tree:SubjectFragmentation; + sh:property [ + sh:name "path"; + sh:path tree:fragmentationPath; + sh:class rdfl:PathLens; + sh:maxCount 1; + sh:minCount 1; + ], [ + sh:name "pathQuads"; + sh:path tree:fragmentationPath; + sh:class ; + sh:maxCount 1; + sh:minCount 1; + ], [ + sh:name "namePath"; + sh:path tree:fragmentationPathName; + sh:class rdfl:pathLens; + sh:maxCount 1; + ], [ + sh:name "defaultName"; + sh:path tree:fragmentationDefaultName; + sh:datatype xsd:string; + sh:maxCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass tree:PageFragmentation; + sh:property [ + sh:name "pageSize"; + sh:path tree:pageSize; + sh:datatype xsd:integer; + sh:maxCount 1; + sh:minCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass tree:TimebasedFragmentation; + sh:property [ + sh:name "path"; + sh:path tree:fragmentationPath; + sh:class rdfl:PathLens; + sh:maxCount 1; + sh:minCount 1; + ], [ + sh:name "maxGranularity"; + sh:path tree:maxGranularity; + sh:datatype xsd:string; + sh:maxCount 1; + ]. + diff --git a/configs/ldesify.ttl b/configs/ldesify.ttl index 92dbc99..a1dba11 100644 --- a/configs/ldesify.ttl +++ b/configs/ldesify.ttl @@ -27,6 +27,18 @@ js:Ldesify a js:JsProcess; a fnom:PositionParameterMapping; fnom:functionParameter "State file path"; fnom:implementationParameterPosition "2"^^xsd:int; + ], [ + a fnom:PositionParameterMapping; + fnom:functionParameter "Check properties"; + fnom:implementationParameterPosition "3"^^xsd:int; + ], [ + a fnom:PositionParameterMapping; + fnom:functionParameter "Timestamp Path"; + fnom:implementationParameterPosition "4"^^xsd:int; + ], [ + a fnom:PositionParameterMapping; + fnom:functionParameter "Version Of Path"; + fnom:implementationParameterPosition "5"^^xsd:int; ]; ]. @@ -44,6 +56,21 @@ js:Ldesify a js:JsProcess; sh:name "Data output channel"; sh:maxCount 1; sh:minCount 1; + ], [ + sh:datatype xsd:boolean; + sh:path js:checkProps; + sh:name "Check properties"; + sh:maxCount 1; + ], [ + sh:datatype xsd:iri; + sh:path js:timestampPath; + sh:name "Timestamp Path"; + sh:maxCount 1; + ], [ + sh:datatype xsd:iri; + sh:path js:versionOfPath; + sh:name "Version Of Path"; + sh:maxCount 1; ], [ sh:datatype xsd:string; sh:path js:path; diff --git a/configs/sds_shapes.ttl b/configs/sds_shapes.ttl new file mode 100644 index 0000000..57f52c8 --- /dev/null +++ b/configs/sds_shapes.ttl @@ -0,0 +1,100 @@ +@prefix tree: . +@prefix rdf: . +@prefix rdfs: . +@prefix sds: . +@prefix sh: . +@prefix xsd: . +@prefix rdfl: . + +[ ] a sh:NodeShape; + sh:targetClass ; + sh:property [ + sh:name "id"; + sh:path ( ); + sh:maxCount 1; + sh:minCount 1; + sh:datatype xsd:iri; + ], [ + sh:name "quads"; + sh:path ( ); + sh:maxCount 1; + sh:minCount 1; + sh:class rdfl:CBD; + ]. + +[ ] a sh:NodeShape; + sh:targetClass <#Bucket>; + sh:property [ + sh:name "links"; + sh:path sds:relation; + sh:class <#Relation>; + ], [ + sh:name "id"; + sh:path ( ); + sh:datatype xsd:iri; + sh:minCount 1; + sh:maxCount 1; + ], [ + sh:name "parent"; + sh:path [ sh:inversePath ( sds:relation sds:relationBucket ) ]; + sh:class <#Bucket>; + sh:maxCount 1; + ], [ + sh:name "root"; + sh:path sds:isRoot; + sh:datatype xsd:boolean; + sh:maxCount 1; + ], [ + sh:name "immutable"; + sh:path sds:immutable; + sh:datatype xsd:boolean; + sh:maxCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass <#Relation>; + sh:property [ + sh:name "type"; + sh:path sds:relationType; + sh:datatype xsd:iri; + sh:minCount 1; + sh:maxCount 1; + ], [ + sh:name "target"; + sh:path sds:relationBucket; + sh:datatype xsd:iri; + sh:minCount 1; + sh:maxCount 1; + ], [ + sh:name "value"; + sh:path sds:relationValue; + sh:datatype xsd:literal; + sh:maxCount 1; + ], [ + sh:name "path"; + sh:path sds:relationPath; + sh:class ; + sh:maxCount 1; + ]. + +[ ] a sh:NodeShape; + sh:targetClass <#Record>; + sh:property [ + sh:name "stream"; + sh:path sds:stream; + sh:datatype xsd:iri; + sh:minCount 1; + sh:maxCount 1; + ], [ + sh:name "data"; + sh:path sds:payload; + sh:datatype xsd:iri; + sh:minCount 1; + sh:maxCount 1; + ], [ + sh:name "bucket"; + sh:path sds:bucket; + sh:class <#Bucket>; + sh:maxCount 1; + ]. + diff --git a/package-lock.json b/package-lock.json index e3e02a7..67421b6 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,42 +1,48 @@ { "name": "sds-processors", - "version": "0.1.4", + "version": "0.2.1", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "sds-processors", - "version": "0.1.4", + "version": "0.2.1", "license": "MIT", "dependencies": { "@treecg/bucketizers": "^2.1.13", "@treecg/types": "^0.4.5", "csv-parse": "^5.5.2", + "extract-cbd-shape": "^0.1.4", "jsonld": "^8.3.1", - "n3": "^1.17.2" + "n3": "^1.17.2", + "rdf-lens": "^1.2.5", + "rdf-stores": "^1.0.0" }, "devDependencies": { - "@ajuvercr/js-runner": "^0.1.12", + "@ajuvercr/js-runner": "^0.2.0-alpha.0", "@jest/globals": "^29.7.0", "@rdfjs/types": "^1.1.0", "@types/jsonld": "^1.5.11", "@types/n3": "^1.16.3", "@types/node": "^20.8.9", + "@types/rdf-js": "^4.0.2", "typescript": "^5.2.2" } }, "node_modules/@ajuvercr/js-runner": { - "version": "0.1.12", + "version": "0.2.0-alpha.1", + "resolved": "https://registry.npmjs.org/@ajuvercr/js-runner/-/js-runner-0.2.0-alpha.1.tgz", + "integrity": "sha512-fk9KukbORPkoeaDnT7kzhbFHt8ls1eiv+oXbQOwC27yjX8tV+8XnxumNcWW8VBTTOD22PQrsJnCJDnhrJaKG3g==", 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"node_modules/wkt": { "version": "0.1.1", - "license": "MIT" + "resolved": "https://registry.npmjs.org/wkt/-/wkt-0.1.1.tgz", + "integrity": "sha512-2vtzYZOqN0VZdtDTMDUgbpXpE+MXRdsFTiCpS08FZ4yktT9pPylVMZaLxcIqT9pRkBp5FIAGVQyJ/kJa9b8uGg==" }, "node_modules/wordwrapjs": { "version": "4.0.1", + "resolved": "https://registry.npmjs.org/wordwrapjs/-/wordwrapjs-4.0.1.tgz", + "integrity": "sha512-kKlNACbvHrkpIw6oPeYDSmdCTu2hdMHoyXLTcUKala++lx5Y+wjJ/e474Jqv5abnVmwxw08DiTuHmw69lJGksA==", "dev": true, - "license": "MIT", "dependencies": { "reduce-flatten": "^2.0.0", "typical": "^5.2.0" @@ -5180,21 +6679,24 @@ }, "node_modules/wordwrapjs/node_modules/typical": { "version": "5.2.0", + "resolved": "https://registry.npmjs.org/typical/-/typical-5.2.0.tgz", + "integrity": "sha512-dvdQgNDNJo+8B2uBQoqdb11eUCE1JQXhvjC/CZtgvZseVd5TYMXnq0+vuUemXbd/Se29cTaUuPX3YIc2xgbvIg==", "dev": true, - "license": "MIT", "engines": { "node": ">=8" } }, "node_modules/wrappy": { "version": "1.0.2", - "dev": true, - "license": "ISC" + "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", + "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==", + "dev": true }, "node_modules/write-file-atomic": { "version": "4.0.2", + "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-4.0.2.tgz", + "integrity": "sha512-7KxauUdBmSdWnmpaGFg+ppNjKF8uNLry8LyzjauQDOVONfFLNKrKvQOxZ/VuTIcS/gge/YNahf5RIIQWTSarlg==", "dev": true, - "license": "ISC", "dependencies": { "imurmurhash": "^0.1.4", "signal-exit": "^3.0.7" @@ -5204,9 +6706,9 @@ } }, "node_modules/ws": { - "version": "8.14.2", - "dev": true, - "license": "MIT", + "version": "8.16.0", + "resolved": "https://registry.npmjs.org/ws/-/ws-8.16.0.tgz", + "integrity": "sha512-HS0c//TP7Ina87TfiPUz1rQzMhHrl/SG2guqRcTOIUYD2q8uhUdNHZYJUaQ8aTGPzCh+c6oawMKW35nFl1dxyQ==", "engines": { "node": ">=10.0.0" }, @@ -5223,9 +6725,24 @@ } } }, + "node_modules/xml-name-validator": { + "version": "5.0.0", + "resolved": "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-5.0.0.tgz", + "integrity": "sha512-EvGK8EJ3DhaHfbRlETOWAS5pO9MZITeauHKJyb8wyajUfQUenkIg2MvLDTZ4T/TgIcm3HU0TFBgWWboAZ30UHg==", + "engines": { + "node": ">=18" + } + }, + "node_modules/xmlchars": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/xmlchars/-/xmlchars-2.2.0.tgz", + "integrity": "sha512-JZnDKK8B0RCDw84FNdDAIpZK+JuJw+s7Lz8nksI7SIuU3UXJJslUthsi+uWBUYOwPFwW7W7PRLRfUKpxjtjFCw==" + }, "node_modules/yallist": { - "version": "4.0.0", - "license": "ISC" + "version": "3.1.1", + "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz", + "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==", + "dev": true } } } diff --git a/package.json b/package.json index 5e4dc00..3877996 100644 --- a/package.json +++ b/package.json @@ -1,11 +1,12 @@ { "name": "sds-processors", - "version": "0.1.4", + "version": "0.2.1", "type": "module", "scripts": { "build": "tsc", "test": "bun test" }, + "main": "./lib/index.js", "files": [ "lib/**/*", "js/**/*", @@ -21,19 +22,23 @@ ], "license": "MIT", "dependencies": { - "@treecg/types": "^0.4.5", "@treecg/bucketizers": "^2.1.13", + "@treecg/types": "^0.4.5", "csv-parse": "^5.5.2", + "extract-cbd-shape": "^0.1.4", "jsonld": "^8.3.1", - "n3": "^1.17.2" + "n3": "^1.17.2", + "rdf-lens": "^1.2.5", + "rdf-stores": "^1.0.0" }, "devDependencies": { - "@ajuvercr/js-runner": "^0.1.12", - "@types/jsonld": "^1.5.11", - "@types/n3": "^1.16.3", + "@ajuvercr/js-runner": "^0.2.0-alpha.0", "@jest/globals": "^29.7.0", "@rdfjs/types": "^1.1.0", + "@types/jsonld": "^1.5.11", + "@types/n3": "^1.16.3", "@types/node": "^20.8.9", + "@types/rdf-js": "^4.0.2", "typescript": "^5.2.2" } } diff --git a/src/bucketizers.ts b/src/bucketizers.ts index 44c866d..2329198 100644 --- a/src/bucketizers.ts +++ b/src/bucketizers.ts @@ -1,11 +1,17 @@ import { FACTORY } from "@treecg/bucketizers"; -import { writeFileSync } from "fs"; +import { readFileSync, writeFileSync } from "fs"; import { readFile } from "fs/promises"; -import { DataFactory, Parser, Quad, Store } from "n3"; +import { DataFactory, Parser, Store } from "n3"; import * as N3 from "n3"; -import { literal, NBNode, SR, SW, transformMetadata } from "./core.js"; +import { blankNode, getLatestShape, getLatestStream, literal, SR, SW, transformMetadata } from "./core"; import { LDES, PPLAN, PROV, RDF, SDS } from "@treecg/types"; import type { Stream, Writer } from "@ajuvercr/js-runner"; +import { BucketizerConfig, BucketizerOrchestrator } from "./bucketizers/index"; +import { Quad, Quad_Object, Term } from "rdf-js"; +import { Bucket, Extractor, Record } from "./utils/index"; +import { CBDShapeExtractor } from "extract-cbd-shape"; +import { Cleanup } from "./exitHandler"; +import { RdfStore } from "rdf-stores"; type Data = { data: Quad[]; metadata: Quad[] }; const { namedNode, quad } = DataFactory; @@ -19,21 +25,23 @@ async function readState(path: string): Promise { } } -async function writeState(path: string, content: any): Promise { +async function writeState( + path: string | undefined, + content: string, +): Promise { if (path) { - const str = JSON.stringify(content); - writeFileSync(path, str, { encoding: "utf-8" }); + writeFileSync(path, content, { encoding: "utf-8" }); } } function addProcess( - id: NBNode | undefined, + id: Term | undefined, store: Store, - strategyId: NBNode, + strategyId: Term, bucketizeConfig: Quad[], -): NBNode { +): Term { const newId = store.createBlankNode(); - const time = new Date().getTime(); + const time = new Date().toISOString(); store.addQuad(newId, RDF.terms.type, PPLAN.terms.Activity); store.addQuad(newId, RDF.terms.type, LDES.terms.Bucketization); @@ -41,9 +49,9 @@ function addProcess( store.addQuads(bucketizeConfig); store.addQuad(newId, PROV.terms.startedAtTime, literal(time)); - store.addQuad(newId, PROV.terms.used, strategyId); + store.addQuad(newId, PROV.terms.used, strategyId); if (id) { - store.addQuad(newId, PROV.terms.used, id); + store.addQuad(newId, PROV.terms.used, id); } return newId; @@ -83,17 +91,13 @@ export async function doTheBucketization( const sw = { metadata: metadataWriter, data: dataWriter }; const content = await readFile(location, { encoding: "utf-8" }); - console.log("content", content); const quads = new Parser().parse(content); - const quadMemberId = ( - quads.find( - (quad) => - quad.predicate.equals(RDF.terms.type) && - quad.object.equals(LDES.terms.BucketizeStrategy), - )!.subject - ); - console.log("Do bucketization", quadMemberId); + const quadMemberId = quads.find( + (quad) => + quad.predicate.equals(RDF.terms.type) && + quad.object.equals(LDES.terms.BucketizeStrategy), + )!.subject; const f = transformMetadata( namedNode(resultingStream), @@ -124,7 +128,6 @@ export async function doTheBucketization( sr.data.data(async (data: Quad[] | string) => { const t = parseQuads(data); - console.log("Bucketizing member"); if (!t.length) return; const checkStream = sourceStream @@ -163,7 +166,190 @@ export async function doTheBucketization( t.push(quad(recordId, SDS.terms.stream, namedNode(resultingStream))); t.push(quad(recordId, RDF.terms.type, SDS.terms.Member)); - console.log("Pushing thing bucketized!"); await sw.data.push(serializeQuads(t)); }); } + +type Channels = { + dataInput: Stream; + metadataInput: Stream; + dataOutput: Writer; + metadataOutput: Writer; +}; + +type Config = { + quads: { id: Term; quads: Quad[] }; + strategy: BucketizerConfig[]; +}; + +function record_to_quads( + record: Record, + resultingStream: Term, + buckets: Bucket[], +): Quad[] { + const id = blankNode(); + const out: Quad[] = [ + quad(id, SDS.terms.payload, record.data.id), + quad(id, SDS.terms.stream, resultingStream), + ...record.data.quads, + ...buckets + .map((bucket) => bucket.id) + .map((bucket) => quad(id, SDS.terms.bucket, bucket)), + ]; + return out; +} + +function bucket_to_quads(bucket: Bucket): Quad[] { + const out: Quad[] = [ + quad( + bucket.id, + RDF.terms.type, + SDS.terms.custom("Bucket"), + ), + ]; + out.push( + quad( + bucket.id, + SDS.terms.custom("immutable"), + literal((bucket.immutable || false) + ""), + ), + ); + + if (bucket.root) { + out.push( + quad( + bucket.id, + SDS.terms.custom("isRoot"), + literal("true"), + ), + ); + } + + for (let rel of bucket.links) { + const id = blankNode(); + out.push( + quad(bucket.id, SDS.terms.relation, id), + quad(id, SDS.terms.relationType, rel.type), + quad(id, SDS.terms.relationBucket, rel.target), + ); + + if (rel.path) { + out.push( + quad(id, SDS.terms.relationPath, rel.path.id), + ...rel.path.quads, + ); + } + + if (rel.value) { + out.push(quad(id, SDS.terms.relationValue, rel.value)); + } + + out.push(); + } + + return out; +} + +function set_metadata( + channels: Channels, + resultingStream: Term, + sourceStream: Term | undefined, + config: Config, +) { + const f = transformMetadata( + resultingStream, + sourceStream, + "sds:Member", + (x, y) => addProcess(x, y, config.quads.id, config.quads.quads), + ); + channels.metadataInput.data((quads) => + channels.metadataOutput.push(serializeQuads(f(parseQuads(quads)))), + ); +} + +function read_save(savePath?: string) { + try { + if (savePath) { + return readFileSync(savePath, { encoding: "utf8" }); + } + } catch (ex: any) {} + return; +} + +export async function bucketize( + channels: Channels, + config: Config, + savePath: string | undefined, + sourceStream: Term | undefined, + resultingStream: Term, +) { + set_metadata(channels, resultingStream, sourceStream, config); + const save = read_save(savePath); + const orchestrator = new BucketizerOrchestrator(config.strategy, save); + const extractor = new Extractor(new CBDShapeExtractor(), sourceStream); + + channels.metadataInput.data((x) => { + const quads = new Parser().parse(x); + + const store = new Store(); + store.addQuads(quads); + + const latest = sourceStream || getLatestStream(store); + const latestShape = !!latest ? getLatestShape(latest, store) : undefined; + + if(latestShape) { + const rdfStore = RdfStore.createDefault(); + quads.forEach(x => rdfStore.addQuad(x)); + const cbd_extract = new CBDShapeExtractor(rdfStore); + + extractor.extractor = cbd_extract; + extractor.shape = latestShape; + + } + + }); + + Cleanup(async () => { + const state = orchestrator.save(); + await writeState(savePath, state); + }); + + const buckets: { [id: string]: Bucket } = {}; + channels.dataInput.data(async (x) => { + const outputQuads: Quad[] = []; + const quads = new Parser().parse(x); + // Strange, this should be doable with just shacl shape definitions + // But it is a good question to ask, what if an sds:Record is not only cbd? + const records = await extractor.parse_records(quads); + const relatedBuckets = new Set(); + for (let record of records) { + const record_buckets = orchestrator.bucketize( + record, + buckets, + sourceStream?.value || "root", + ); + outputQuads.push( + ...record_to_quads( + record, + resultingStream, + record_buckets.map((x) => buckets[x]), + ), + ); + + for (let b of record_buckets) { + relatedBuckets.add(b); + let parent = buckets[b].parent; + while (parent) { + relatedBuckets.add(parent.id.value); + parent = parent.parent; + } + } + } + + for (let relatedBucket of relatedBuckets.values()) { + outputQuads.push(...bucket_to_quads(buckets[relatedBucket])); + } + + await channels.dataOutput.push(new N3.Writer().quadsToString(outputQuads)); + }); +} diff --git a/src/bucketizers/bucketizers.ts b/src/bucketizers/bucketizers.ts new file mode 100644 index 0000000..0b64caf --- /dev/null +++ b/src/bucketizers/bucketizers.ts @@ -0,0 +1,116 @@ +import { BasicLensM, Cont } from "rdf-lens"; +import { Bucket, RdfThing, Record } from "../utils"; +import { TREE } from "@treecg/types"; +import { Bucketizer, PageFragmentation, SubjectFragmentation } from "."; +import { Term } from "rdf-js"; +import { warn } from "console"; +import { Writer } from "n3"; + +export class PagedBucketizer implements Bucketizer { + private readonly pageSize: number; + private count: number = 0; + + constructor(config: PageFragmentation, save?: string) { + this.pageSize = config.pageSize; + + if (save) { + this.count = JSON.parse(save); + } + } + + bucketize( + _: Record, + getBucket: (key: string, root?: boolean) => Bucket, + ): Bucket[] { + const index = Math.floor(this.count / this.pageSize); + this.count += 1; + const currentbucket = getBucket("page-" + index, index == 0); + + if (this.count % this.pageSize == 1 && this.count > 1) { + const oldBucket = getBucket("page-" + (index - 1), index - 1 == 0); + oldBucket.immutable = true; + oldBucket.addRelation(currentbucket, TREE.terms.Relation); + } + + return [currentbucket]; + } + + save() { + return JSON.stringify(this.count); + } +} + +export class SubjectBucketizer implements Bucketizer { + private readonly path: BasicLensM; + private readonly pathQuads: RdfThing; + private readonly namePath?: BasicLensM; + private readonly defaultName?: string; + + private seen: Set = new Set(); + + constructor(config: SubjectFragmentation, save?: string) { + console.log("path", config.path.constructor.name); + this.path = config.path.mapAll((x) => ({ + value: x.id.value, + literal: x.id, + })); + this.pathQuads = config.pathQuads; + this.namePath = config.namePath; + this.defaultName = config.defaultName; + + if (save) { + this.seen = new Set(JSON.parse(save)); + } + } + + bucketize( + record: Record, + getBucket: (key: string, root?: boolean) => Bucket, + ): Bucket[] { + const values = this.path.execute(record.data); + console.log(new Writer().quadsToString(record.data.quads)); + const out: Bucket[] = []; + + const root = getBucket("root", true); + + if (values.length === 0 && this.defaultName) { + values.push({ value: this.defaultName }); + } + + if (values.length === 0) { + console.error( + "Didn't find bucket, and default name is not set, sadness :(", + ); + } + + for (let value of values) { + const name = value.literal + ? this.namePath?.execute({ + id: value.literal, + quads: record.data.quads, + })[0] || value.literal.value + : value.value; + + const bucket = getBucket("bucket-" + name); + + if (!this.seen.has(value.value)) { + this.seen.add(value.value); + + root.addRelation( + bucket, + TREE.terms.EqualToRelation, + value.literal, + value.literal ? this.pathQuads : undefined, + ); + } + + out.push(bucket); + } + + return out; + } + + save() { + return JSON.stringify([...this.seen.values()]); + } +} diff --git a/src/bucketizers/index.ts b/src/bucketizers/index.ts new file mode 100644 index 0000000..d0df8c9 --- /dev/null +++ b/src/bucketizers/index.ts @@ -0,0 +1,136 @@ +import { readFileSync } from "fs"; +import * as path from "path"; +import { Term } from "rdf-js"; +import { BasicLensM, Cont } from "rdf-lens"; +import { Bucket, Record } from "../utils"; +import { TREE } from "@treecg/types"; +import { namedNode } from "../core"; +import { PagedBucketizer, SubjectBucketizer } from "./bucketizers"; + +export const SHAPES_FILE_LOCATION = path.join( + __dirname, + "../../configs/bucketizer_configs.ttl", +); +export const SHAPES_TEXT = readFileSync(SHAPES_FILE_LOCATION, { + encoding: "utf8", +}); + +export type BucketizerConfig = { + type: Term; + config: SubjectFragmentation | PageFragmentation | TimebasedFragmentation; +}; + +export type SubjectFragmentation = { + path: BasicLensM; + pathQuads: Cont; + namePath?: BasicLensM; + defaultName?: string; +}; + +export type PageFragmentation = { + pageSize: number; +}; + +export type TimebasedFragmentation = { + path: BasicLensM; + maxGranularity: "day" | "hour" | "second"; +}; + +export interface Bucketizer { + bucketize( + sdsMember: Record, + getBucket: (key: string, root?: boolean) => Bucket, + ): Bucket[]; + + save(): string; +} + +type Save = { [key: string]: { bucketizer?: Bucketizer; save?: string } }; + +function createBucketizer(config: BucketizerConfig, save?: string): Bucketizer { + switch (config.type.value) { + case TREE.custom("SubjectFragmentation"): + return new SubjectBucketizer(config.config, save); + case TREE.custom("PageFragmentation"): + return new PagedBucketizer(config.config, save); + case TREE.custom("TimebasedFragmentation"): + throw "Not yet implemented"; + } + throw "Unknown bucketizer " + config.type.value; +} + +export class BucketizerOrchestrator { + private readonly configs: BucketizerConfig[]; + + private saves: Save = {}; + + constructor(configs: BucketizerConfig[], save?: string) { + this.configs = configs; + + if (save) { + this.saves = JSON.parse(save); + } + } + + bucketize( + record: Record, + buckets: { [id: string]: Bucket }, + prefix = "", + ): string[] { + let queue = [prefix]; + + for (let i = 0; i < this.configs.length; i++) { + const todo = queue.slice(); + queue = []; + + for (let prefix of todo) { + const bucketizer = this.getBucketizer(i, prefix); + + const getBucket = (value: string, root?: boolean) => { + const terms = value.split("/"); + const key = terms[terms.length - 1].replaceAll("#", "-"); + // If the requested bucket is the root, it actually is the previous bucket + const id = root ? prefix : prefix + "/" + key; + if (!buckets[id]) { + buckets[id] = new Bucket(namedNode(id), [], false); + } + return buckets[id]; + }; + + const foundBucket = bucketizer.bucketize(record, getBucket); + + for (let bucket of foundBucket) { + queue.push(bucket.id.value); + } + } + } + + if (buckets[prefix]) { + buckets[prefix].root = true; + } + + return queue; + } + + save(): string { + for (let key of Object.keys(this.saves)) { + this.saves[key].save = this.saves[key].bucketizer?.save(); + delete this.saves[key].bucketizer; + } + return JSON.stringify(this.saves); + } + + private getBucketizer(index: number, key: string): Bucketizer { + if (!this.saves[key]) { + this.saves[key] = {}; + } + + const save = this.saves[key]; + + if (!save.bucketizer) { + save.bucketizer = createBucketizer(this.configs[index], save.save); + } + + return save.bucketizer!; + } +} diff --git a/src/core.ts b/src/core.ts index 08d2b7d..643e370 100644 --- a/src/core.ts +++ b/src/core.ts @@ -1,131 +1,171 @@ -import type { Writer, Stream } from "@ajuvercr/js-runner"; -import { BlankNode, DataFactory, DefaultGraph, NamedNode, Quad, Store, Term, Writer as NWriter } from "n3"; +import type { Stream, Writer } from "@ajuvercr/js-runner"; +import { BlankNode, DataFactory, DefaultGraph, NamedNode, Store } from "n3"; import { PROV, RDF, SDS, SHACL } from "@treecg/types"; - +import { Quad, Quad_Object, Quad_Subject, Term } from "rdf-js"; export const { namedNode, blankNode, literal, quad } = DataFactory; - export type NBNode = NamedNode | BlankNode; -export type ShapeTransform = (id: NBNode | undefined, store: Store) => NBNode | undefined; -export type AddProcess = (used: NBNode | undefined, store: Store) => NBNode; -export type DatasetTransform = (used: NBNode | undefined, store: Store) => NBNode; +export type ShapeTransform = ( + id: Term | undefined, + store: Store, +) => Term | undefined; +export type AddProcess = (used: Term | undefined, store: Store) => Term; +export type DatasetTransform = (used: Term | undefined, store: Store) => Term; export type QuadsTransform = (quads: Quad[]) => Quad[]; -function getLatestStream(store: Store): NBNode | undefined { - const streams = store.getSubjects(RDF.terms.type, SDS.terms.Stream, null) - .filter(sub => store.getQuads(null, PROV.terms.used, sub, null).length === 0); +export function getLatestStream(store: Store): NBNode | undefined { + const streams = store + .getSubjects(RDF.terms.type, SDS.terms.Stream, null) + .filter( + (sub) => store.getQuads(null, PROV.terms.used, sub, null).length === 0, + ); - if (streams.length != 1) { - console.error(`Couldn't determine previous stream, extected one got ${streams.length}`); - return undefined; - } + if (streams.length != 1) { + console.error( + `Couldn't determine previous stream, extected one got ${streams.length}`, + ); + return undefined; + } - return streams[0]; + return streams[0]; } -function getLatestShape(streamId: Term, store: Store): NBNode | undefined { - console.log("Found predicates for stream", streamId, - store.getPredicates(streamId, null, null) - ) - const shapes = store.getObjects(streamId, SDS.terms.carries, new DefaultGraph()); +export function getLatestShape(streamId: Term, store: Store): NBNode | undefined { + console.log( + "Found predicates for stream", + streamId, + store.getPredicates(streamId, null, null), + ); + const shapes = store.getObjects( + streamId, + SDS.terms.carries, + new DefaultGraph(), + ); + + if (shapes.length !== 1) { + console.error( + `A sds:stream should carry one type of members, not ${shapes.length}`, + ); + if (shapes.length == 0) return; + } - if (shapes.length !== 1) { - console.error(`A sds:stream should carry one type of members, not ${shapes.length}`) - if (shapes.length == 0) return - } + const shapeIds = shapes.flatMap((id) => + store.getObjects(id, SDS.terms.shape, null), + ); - const shapeIds = shapes.flatMap(id => - store.getObjects(id, SDS.terms.shape, null) + if (shapeIds.length !== 1) { + console.error( + `A sds:stream can only carry one specified shape, not ${shapeIds.length}`, ); + return; + } - if (shapeIds.length !== 1) { - console.error(`A sds:stream can only carry one specified shape, not ${shapeIds.length}`) - return - } - - console.log("Found valid stream", shapeIds[0]); - return shapeIds[0] + return shapeIds[0]; } -function getLatestDataset(streamId: Term, store: Store): NBNode | undefined { - const datasets = store.getObjects(streamId, SDS.terms.dataset, null); +function getLatestDataset(streamId: Term, store: Store): Term | undefined { + const datasets = store.getObjects(streamId, SDS.terms.dataset, null); - if (datasets.length !== 1) { - console.error(`A sds:stream should be derived from one dataset, not ${datasets.length}`) - if (datasets.length == 0) return - } + if (datasets.length !== 1) { + console.error( + `A sds:stream should be derived from one dataset, not ${datasets.length}`, + ); + if (datasets.length == 0) return; + } - return datasets[0]; + return datasets[0]; } -export function transformMetadata(streamId: NBNode, sourceStream: NamedNode | undefined, itemType: string, gp: AddProcess, shT?: ShapeTransform, datasetT?: DatasetTransform): QuadsTransform { - return (quads: Quad[]) => { - const store = new Store(); - console.log("handling metadata transform"); - store.addQuads(quads); - - const latest = sourceStream || getLatestStream(store); - const latestShape = !!latest ? getLatestShape(latest, store) : undefined; - - const activityId = gp(latest, store); +export function transformMetadata( + streamId: Term, + sourceStream: Term | undefined, + itemType: string, + gp: AddProcess, + shT?: ShapeTransform, + datasetT?: DatasetTransform, +): QuadsTransform { + return (quads: Quad[]) => { + const store = new Store(); + store.addQuads(quads); - const newShape = shT && shT(latestShape, store) || undefined; + const latest = sourceStream || getLatestStream(store); + const latestShape = !!latest ? getLatestShape(latest, store) : undefined; - let datasetId = !!latest ? getLatestDataset(latest, store) : undefined; - if (datasetId && datasetT) { - datasetId = datasetT(datasetId, store); - } + const activityId = gp(latest, store); + const newShape = (shT && shT(latestShape, store)) || undefined; - const blank = store.createBlankNode(); - - store.addQuad(streamId, RDF.terms.type, SDS.terms.Stream); - if (datasetId) { - store.addQuad(streamId, SDS.terms.dataset, datasetId); - } - store.addQuad(streamId, SDS.terms.carries, blank); - store.addQuad(streamId, PROV.terms.wasGeneratedBy, activityId); - - store.addQuad(blank, RDF.terms.type, namedNode(itemType)); - - if (newShape) - store.addQuad(blank, SDS.terms.shape, newShape); - + let datasetId = !!latest ? getLatestDataset(latest, store) : undefined; + if (datasetId && datasetT) { + datasetId = datasetT(datasetId, store); + } - const out: Quad[] = []; - for (let q of store) out.push(q); + const blank = store.createBlankNode(); - console.log("returning new metadata"); - return out; + store.addQuad(streamId, RDF.terms.type, SDS.terms.Stream); + if (datasetId) { + store.addQuad( + streamId, + SDS.terms.dataset, + datasetId, + ); } -} + store.addQuad(streamId, SDS.terms.carries, blank); + store.addQuad( + streamId, + PROV.terms.wasGeneratedBy, + activityId, + ); -export function createProperty(store: Store, path: NBNode, dataType?: NBNode, nodeKind?: NBNode, minCount?: number, maxCount?: number): BlankNode | NamedNode { - const newId = store.createBlankNode(); + store.addQuad(blank, RDF.terms.type, namedNode(itemType)); - store.addQuad(newId, SHACL.terms.path, path) - if (dataType) - store.addQuad(newId, SHACL.terms.datatype, dataType) + if (newShape) { + store.addQuad(blank, SDS.terms.shape, newShape); + } - if (nodeKind) - store.addQuad(newId, SHACL.terms.nodeKind, nodeKind) + const out: Quad[] = []; + for (let q of store) out.push(q); - if (minCount !== undefined) - store.addQuad(newId, SHACL.terms.minCount, literal(minCount)) - if (maxCount !== undefined) - store.addQuad(newId, SHACL.terms.maxCount, literal(maxCount)) + return out; + }; +} - return newId; +export function createProperty( + store: Store, + path: NBNode, + dataType?: NBNode, + nodeKind?: NBNode, + minCount?: number, + maxCount?: number, +): BlankNode | NamedNode { + const newId = store.createBlankNode(); + + store.addQuad(newId, SHACL.terms.path, path); + if (dataType) { + store.addQuad(newId, SHACL.terms.datatype, dataType); + } + + if (nodeKind) { + store.addQuad(newId, SHACL.terms.nodeKind, nodeKind); + } + + if (minCount !== undefined) { + store.addQuad(newId, SHACL.terms.minCount, literal(minCount)); + } + if (maxCount !== undefined) { + store.addQuad(newId, SHACL.terms.maxCount, literal(maxCount)); + } + + return newId; } export type SR = { - [P in keyof T]: Stream; -} + [P in keyof T]: Stream; +}; export type SW = { - [P in keyof T]: Writer; -} - + [P in keyof T]: Writer; +}; diff --git a/src/index.ts b/src/index.ts new file mode 100644 index 0000000..3b56fb1 --- /dev/null +++ b/src/index.ts @@ -0,0 +1,5 @@ +import { Bucket, Extractor, Record } from "./utils"; +import { CBDShapeExtractor } from "extract-cbd-shape"; +import type { BucketDTO, RelationDTO } from "./utils"; +export { Bucket, CBDShapeExtractor, Extractor, Record }; +export type { BucketDTO, RelationDTO }; diff --git a/src/ldesify.ts b/src/ldesify.ts index 622357a..60728e1 100644 --- a/src/ldesify.ts +++ b/src/ldesify.ts @@ -1,16 +1,10 @@ import type { Stream, Writer } from "@ajuvercr/js-runner"; +import { Term } from "@rdfjs/types"; import { readFileSync, writeFileSync } from "fs"; import * as n3 from "n3"; - const { namedNode, quad, literal } = n3.DataFactory; -type Prop = { - pred: n3.Term, - value: n3.Term, - subj: n3.Term -}; - type StateDict = { [identify: string]: n3.Quad[] }; type StateCache = { [identify: string]: string }; @@ -18,14 +12,14 @@ function getPrevState(path: string): StateCache { try { return JSON.parse(readFileSync(path).toString()); } catch (ex: any) { - return {} + return {}; } } function createCache(quads: n3.Quad[], keys: string[]): string { let out = ""; for (let key of keys) { - const v = quads.find(v => v.predicate.value === key); + const v = quads.find((v) => v.predicate.value === key); if (v) { out += v.object.value; } else { @@ -37,67 +31,160 @@ function createCache(quads: n3.Quad[], keys: string[]): string { return out.slice(0, -1); } -const IS_VERSION_OF = namedNode("http://purl.org/dc/terms/isVersionOf") -const MODIFIED = namedNode("http://purl.org/dc/terms/modified") +const IS_VERSION_OF = namedNode("http://purl.org/dc/terms/isVersionOf"); +const MODIFIED = namedNode("http://purl.org/dc/terms/modified"); const TIMESTAMP = namedNode("http://www.w3.org/2001/XMLSchema#dateTime"); -export function ldes_transform(input: string, path: string) { - const quads = new n3.Parser().parse(input); +class Transformer { + private readonly modifiedPath: Term; + private readonly isVersionOfPath: Term; + + private cache: StateCache; + + constructor(modifiedPath: Term, isVersionOfPath: Term, cache?: StateCache) { + this.modifiedPath = modifiedPath; + this.isVersionOfPath = isVersionOfPath; + if (cache) { + this.cache = cache; + } else { + this.cache = {}; + } + } + + save(): string { + return JSON.stringify(this.cache); + } + + simpleTransform(input: string): string { + const quads = new n3.Parser().parse(input); + + const newState: StateDict = {}; + const ids = new Set(); + const keys = new Set(); - const preState = getPrevState(path); - const newState: StateDict = {}; - const newCache: StateCache = {}; - const ids = new Set(); - const keys = new Set(); + const out: n3.Quad[] = []; - const out: n3.Quad[] = []; + for (let quad of quads) { + if (!newState[quad.subject.value]) { + newState[quad.subject.value] = []; + } + newState[quad.subject.value].push(quad); - for (let quad of quads) { - if (!newState[quad.subject.value]) { - newState[quad.subject.value] = []; + ids.add(quad.subject.value); + keys.add(quad.predicate.value); } - newState[quad.subject.value].push(quad); + const key_sorted = [...keys]; + key_sorted.sort(); + + for (let v of Object.values(newState)) { + const subject = v[0].subject; + + const date = new Date().toISOString(); + const sub = namedNode(v[0].subject.value + "#" + date); + + out.push( + quad( + sub, + this.modifiedPath, + literal(date, TIMESTAMP), + ), // VersionOf + quad(sub, this.isVersionOfPath, subject), // Timestamp + ); - ids.add(quad.subject.value); - keys.add(quad.predicate.value); + for (let q of v) { + out.push(quad(sub, q.predicate, q.object)); + } + } + + const st = new n3.Writer().quadsToString(out); + return st; } - const key_sorted = [...keys]; - key_sorted.sort(); + transformCheckState(input: string): string { + const quads = new n3.Parser().parse(input); + + const newState: StateDict = {}; + const newCache: StateCache = {}; + const ids = new Set(); + const keys = new Set(); + + const out: n3.Quad[] = []; - for (let [k, v] of Object.entries(newState)) { - newCache[k] = createCache(v, key_sorted); + for (let quad of quads) { + if (!newState[quad.subject.value]) { + newState[quad.subject.value] = []; + } - if (newCache[k] === preState[k]) { - continue; + newState[quad.subject.value].push(quad); + + ids.add(quad.subject.value); + keys.add(quad.predicate.value); } - const subject = v[0].subject; + const key_sorted = [...keys]; + key_sorted.sort(); + + for (let [k, v] of Object.entries(newState)) { + newCache[k] = createCache(v, key_sorted); + + if (newCache[k] === this.cache[k]) { + continue; + } - const date = new Date().toISOString(); - const sub = namedNode(v[0].subject.value +"#" + date) + const subject = v[0].subject; - out.push( - quad(sub, MODIFIED, literal(date, TIMESTAMP)), // VersionOf - quad(sub, IS_VERSION_OF, subject), // Timestamp - ); + const date = new Date().toISOString(); + const sub = namedNode(v[0].subject.value + "#" + date); - for (let q of v) { - out.push(quad(sub, q.predicate, q.object)); + out.push( + quad( + sub, + this.modifiedPath, + literal(date, TIMESTAMP), + ), // VersionOf + quad(sub, this.isVersionOfPath, subject), // Timestamp + ); + + for (let q of v) { + out.push(quad(sub, q.predicate, q.object)); + } } - } + this.cache = newCache; - writeFileSync(path, JSON.stringify(newCache)); - const st = new n3.Writer().quadsToString(out); - return st; + const st = new n3.Writer().quadsToString(out); + return st; + } } -export function ldesify(reader: Stream, writer: Writer, statePath: string) { - reader.data(x => { - const st = ldes_transform(x, statePath); +export function ldesify( + reader: Stream, + writer: Writer, + statePath?: string, + check_properties: boolean = true, + modifiedPath?: Term, + isVersionOfPath?: Term, +) { + let cache = {}; + if (statePath) cache = getPrevState(statePath); + const transformer = new Transformer( + modifiedPath || MODIFIED, + isVersionOfPath || IS_VERSION_OF, + cache, + ); + + reader.on("end", () => { + if (statePath) { + writeFileSync(statePath, transformer.save(), { encoding: "utf8" }); + } + }); + + reader.data((x) => { + const st = check_properties + ? transformer.transformCheckState(x) + : transformer.simpleTransform(x); return writer.push(st); }); } diff --git a/src/main.ts b/src/main.ts index f6a069e..3e3c4a1 100644 --- a/src/main.ts +++ b/src/main.ts @@ -1,5 +1,4 @@ - export { updateMetadata } from "./metadatatransforms.js"; -export { doTheBucketization } from "./bucketizers.js"; +export { bucketize } from "./bucketizers.js"; -export { readCsvFile, readCsvAsRDF } from "./readCsv.js"; +export { readCsvAsRDF, readCsvFile } from "./readCsv.js"; diff --git a/src/metadatatransforms.ts b/src/metadatatransforms.ts index 4bb3524..10c5c6d 100644 --- a/src/metadatatransforms.ts +++ b/src/metadatatransforms.ts @@ -1,50 +1,85 @@ -import { BlankNode, NamedNode, Quad, Store, Term, DataFactory } from "n3"; -import { createProperty, literal, NBNode, SR, SW, transformMetadata } from "./core.js"; +import { BlankNode, DataFactory, NamedNode, Store } from "n3"; +import { + createProperty, + literal, + NBNode, + SR, + SW, + transformMetadata, +} from "./core.js"; import { EX, PPLAN, PROV, RDF, SHACL, XSD } from "@treecg/types"; +import { Quad, Quad_Object, Term } from "rdf-js"; const { namedNode } = DataFactory; -function shapeTransform(id: Term | undefined, store: Store): BlankNode | NamedNode { - const newId = store.createBlankNode(); - if (id) { - const quads = store.getQuads(id, null, null, null); - store.addQuads(quads); - return newId - } +function shapeTransform( + id: Term | undefined, + store: Store, +): BlankNode | NamedNode { + const newId = store.createBlankNode(); + if (id) { + const quads = store.getQuads(id, null, null, null); + store.addQuads(quads); + return newId; + } - const intTerm = XSD.terms.integer; + const intTerm = XSD.terms.integer; - const p1 = createProperty(store, EX.terms.custom("x"), intTerm, undefined, 1, 1); - const p2 = createProperty(store, EX.terms.custom("y"), intTerm, undefined, 1, 1); + const p1 = createProperty( + store, + EX.terms.custom("x"), + intTerm, + undefined, + 1, + 1, + ); + const p2 = createProperty( + store, + EX.terms.custom("y"), + intTerm, + undefined, + 1, + 1, + ); - store.addQuad(newId, RDF.terms.type, SHACL.terms.NodeShape) - store.addQuad(newId, SHACL.terms.targetClass, EX.terms.custom("Point")); + store.addQuad(newId, RDF.terms.type, SHACL.terms.NodeShape); + store.addQuad(newId, SHACL.terms.targetClass, EX.terms.custom("Point")); - store.addQuad(newId, SHACL.terms.property, p1); - store.addQuad(newId, SHACL.terms.property, p2); + store.addQuad(newId, SHACL.terms.property, p1); + store.addQuad(newId, SHACL.terms.property, p2); - return newId; + return newId; } -function addProcess(id: NBNode | undefined, store: Store): NBNode { - const newId = store.createBlankNode(); - const time = new Date().getTime(); +function addProcess(id: Term | undefined, store: Store): Term { + const newId = store.createBlankNode(); + const time = new Date().toISOString(); - store.addQuad(newId, RDF.terms.type, PPLAN.terms.Activity); - if (id) - store.addQuad(newId, PROV.terms.used, id); - store.addQuad(newId, PROV.terms.startedAtTime, literal(time)); + store.addQuad(newId, RDF.terms.type, PPLAN.terms.Activity); + if (id) { + store.addQuad(newId, PROV.terms.used, id); + } + store.addQuad(newId, PROV.terms.startedAtTime, literal(time)); - return newId; + return newId; } -type Data = { "metadata": Quad[] }; -export function updateMetadata(sr: SR, sw: SW, sourceStream: string | undefined, newStream: string) { - const sourceStreamName = sourceStream ? namedNode(sourceStream) : undefined; - const newStreamName = namedNode(newStream); - const f = transformMetadata(newStreamName, sourceStreamName, "sds:Member", addProcess, shapeTransform); +type Data = { metadata: Quad[] }; +export function updateMetadata( + sr: SR, + sw: SW, + sourceStream: string | undefined, + newStream: string, +) { + const sourceStreamName = sourceStream ? namedNode(sourceStream) : undefined; + const newStreamName = namedNode(newStream); + const f = transformMetadata( + newStreamName, + sourceStreamName, + "sds:Member", + addProcess, + shapeTransform, + ); - sr.metadata.data( - quads => sw.metadata.push(f(quads)) - ); + sr.metadata.data((quads) => sw.metadata.push(f(quads))); } diff --git a/src/sdsify.ts b/src/sdsify.ts index 34cb1aa..9111a4b 100644 --- a/src/sdsify.ts +++ b/src/sdsify.ts @@ -41,24 +41,12 @@ export function sdsify( ) { input.data(async (input) => { const quads = maybe_parse(input); - console.log("sdsify: Got input", quads.length, "quads"); - logger.info("sdsisfy got input!"); - - const types = quads - .filter((x) => x.predicate.equals(RDFT.terms.type)) - .map((x) => x.object.value) - .join(", "); - logger.info("Found types " + types); - const members: { [id: string]: RDF.Quad[] } = {}; if (type) { - logger.info("Extracting with type " + type); // Group quads based on given member type const store = new Store(quads); for (const quad of store.getQuads(null, RDFT.terms.type, type, null)) { - logger.info("Found one!"); - console.log("Found one!"); members[quad.subject.value] = extractMember(store, quad.subject); } } else { @@ -79,23 +67,17 @@ export function sdsify( const quads = members[key]; if (first) { first = false; - console.log( - "predicates", - quads.map((q) => q.predicate.value), - ); } const blank = blankNode(); quads.push( DataFactory.quad(blank, SDS.terms.payload, namedNode(key)), - DataFactory.quad(blank, SDS.terms.stream, streamNode), + DataFactory.quad(blank, SDS.terms.stream, streamNode), ); const str = new NWriter().quadsToString(quads); await output.push(str); membersCount += 1; } - - console.log("sdsify: pushed ", membersCount, "members"); }); input.on("end", () => { diff --git a/src/utils/index.ts b/src/utils/index.ts new file mode 100644 index 0000000..64ae308 --- /dev/null +++ b/src/utils/index.ts @@ -0,0 +1,231 @@ +import { Quad, Term } from "@rdfjs/types"; +import { blankNode, literal, namedNode, NBNode, quad } from "../core"; +import { Parser, Quad_Object, Quad_Subject, Writer } from "n3"; +import { SDS, XSD } from "@treecg/types"; +import { BasicLensM, extractShapes, match, Shapes, subject } from "rdf-lens"; +import { readFileSync } from "fs"; +import { CBDShapeExtractor } from "extract-cbd-shape"; +import { RdfStore } from "rdf-stores"; +import * as path from "path"; + +export const SDS_GRAPH = SDS.terms.custom("DataDescription"); +export const SHAPES_FILE_LOCATION = path.join( + __dirname, + "../../configs/sds_shapes.ttl", +); +export const SHAPES_TEXT = readFileSync(SHAPES_FILE_LOCATION, { + encoding: "utf8", +}); + +export type RdfThing = { + id: Term; + quads: Quad[]; +}; + +export type RelationDTO = { + type: Term; + target: Term; + value?: any; + path?: RdfThing; +}; + +export type BucketDTO = { + links: RelationDTO[]; + id: Term; + root?: boolean; + immutable?: boolean; + parent?: BucketDTO; +}; + +export type BucketRelation = { + type: Term; + target: Term; + value?: Term; + path?: RdfThing; +}; + +function writeRelation(rel: BucketRelation, writer: Writer): Term { + const id = blankNode(); + writer.addQuads([ + quad(id, SDS.terms.relationType, rel.type), + quad(id, SDS.terms.relationBucket, rel.target), + ]); + + if (rel.value) { + writer.addQuad(quad(id, SDS.terms.relationValue, rel.value)); + } + if (rel.path) { + writer.addQuads([ + quad(id, SDS.terms.relationPath, rel.path.id), + ...rel.path.quads, + ]); + } + return id; +} + +export class Bucket { + id: Term; + parent?: Bucket; + root?: boolean; + immutable?: boolean; + links: BucketRelation[]; + + constructor( + id: Term, + links: BucketRelation[], + root?: boolean, + immutable?: boolean, + parent?: Bucket, + ) { + this.id = id; + this.root = root; + this.immutable = immutable; + this.links = links; + this.parent = parent; + } + + static parse( + bucket: BucketDTO, + bucket_cache: { [id: string]: Bucket }, + ): Bucket { + const parent = bucket.parent + ? Bucket.parse(bucket.parent, bucket_cache) + : undefined; + const links = bucket.links.map(({ target, path, value, type }) => ({ + path, + value, + type, + target: target, + })); + const out = new Bucket( + bucket.id, + links, + bucket.root, + bucket.immutable, + parent, + ); + bucket_cache[bucket.id.value] = out; + return out; + } + + addRelation(target: Bucket, type: Term, value?: Term, path?: RdfThing) { + this.links.push({ type, value, path, target: target.id }); + target.parent = this; + } + + write(writer: Writer) { + const id = this.id; + const relations = this.links + .map((rel) => writeRelation(rel, writer)) + .map((rel) => quad(id, SDS.terms.relation, rel)); + + if (this.root) { + relations.push( + quad( + id, + SDS.terms.custom("isRoot"), + literal("true", XSD.terms.custom("boolean")), + ), + ); + } + + writer.addQuads(relations); + } +} + +interface RecordDTO { + stream: Term; + data: Term; + bucket: any; +} + +export class Record { + stream: Term; + data: RdfThing; + bucket?: Bucket; + + constructor(data: RdfThing, stream: Term, bucket?: Bucket) { + this.stream = stream; + this.data = data; + this.bucket = bucket; + } + + static async parse( + { stream, data, bucket }: RecordDTO, + store: RdfStore, + extractor: CBDShapeExtractor, + bucket_cache: { [id: string]: Bucket }, + shape?: NBNode, + ): Promise { + const thingQuads = await extractor.extract(store, data, shape); + + let actual_bucket: Bucket | undefined; + if (bucket) { + actual_bucket = Bucket.parse(bucket, bucket_cache); + } + + return new Record({ id: data, quads: thingQuads }, stream, actual_bucket); + } + + write(writer: Writer) { + const id = blankNode(); + + const quads = [ + quad(id, SDS.terms.payload, this.data.id), + quad(id, SDS.terms.stream, this.stream), + ]; + if (this.bucket) { + quads.push(quad(id, SDS.terms.bucket, this.bucket.id)); + this.bucket.write(writer); + } + writer.addQuads(quads); + } +} + +export class Extractor { + extractor: CBDShapeExtractor; + shapes: Shapes; + lens: BasicLensM; + shape?: NBNode; + + bucket_cache: { [id: string]: Bucket } = {}; + + constructor(extractor: CBDShapeExtractor, stream?: Term) { + this.extractor = extractor; + + const quads = new Parser({ baseIRI: "" }).parse(SHAPES_TEXT); + this.shapes = extractShapes(quads, { + "#Bucket": (item) => { + return Bucket.parse(item, this.bucket_cache); + }, + }); + + this.lens = >match( + undefined, + SDS.terms.stream, + stream, + ) + .thenAll(subject) + .thenSome(this.shapes.lenses["#Record"]) + .mapAll((x) => x); + } + + async parse_records(quads: Quad[]): Promise { + const store = RdfStore.createDefault(); + quads.forEach((quad) => store.addQuad(quad)); + + const dtos = this.lens.execute(quads); + + return await Promise.all( + dtos.map((dto) => { + return Record.parse( + dto, + store, + this.extractor, + this.bucket_cache, + this.shape, + ); + }), + ); + } +} diff --git a/test/bucketizer.test.ts b/test/bucketizer.test.ts new file mode 100644 index 0000000..1238b95 --- /dev/null +++ b/test/bucketizer.test.ts @@ -0,0 +1,238 @@ +import { describe, expect, test } from "@jest/globals"; +import { DataFactory, Parser } from "n3"; +import { extractShapes } from "rdf-lens"; +import { + BucketizerOrchestrator, + Config, + PageFragmentation, + SHAPES_TEXT, + SubjectFragmentation, + TimebasedFragmentation, +} from "../src/bucketizers/index"; +import { Bucket, Record } from "../src/utils"; + +const { namedNode, blankNode, literal, quad } = DataFactory; + +describe("Bucketizer configs", () => { + const quads = new Parser({ baseIRI: "" }).parse(SHAPES_TEXT); + + const shapes = extractShapes(quads); + const lens = shapes.lenses["https://w3id.org/tree#FragmentationStrategy"]; + + test("Subject Page", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + [ + 42; +]. + + a tree:SubjectFragmentation; + tree:fragmentationPath ( ). +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const output: Config = lens.execute({ id: namedNode("a"), quads }); + + expect(output.type.value).toBe( + "https://w3id.org/tree#SubjectFragmentation", + ); + const config = output.config; + expect(config.path).toBeDefined(); + + const applied = config.path.execute({ id: namedNode("test"), quads }); + expect(applied.map((x) => x.id.value)).toEqual(["42"]); + + expect(config.pathQuads).toBeDefined(); + expect(config.pathQuads.id.termType).toBe("BlankNode"); + expect(config.pathQuads.quads.length).toBe(4); + }); + + test("Subject Page - simple path", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + [ + 42; +]. + + a tree:SubjectFragmentation; + tree:fragmentationPath . +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const output: Config = lens.execute({ id: namedNode("a"), quads }); + + expect(output.type.value).toBe( + "https://w3id.org/tree#SubjectFragmentation", + ); + const config = output.config; + expect(config.path).toBeDefined(); + + expect(config.pathQuads).toBeDefined(); + expect(config.pathQuads.id.termType).toBe("NamedNode"); + expect(config.pathQuads.quads.length).toBe(0); + }); + + test("Timebased", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + [ + 42; +]. + + a tree:TimebasedFragmentation; + tree:maxGranularity "hour"; + tree:fragmentationPath ( ). +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const output: Config = lens.execute({ id: namedNode("a"), quads }); + + expect(output.type.value).toBe( + "https://w3id.org/tree#TimebasedFragmentation", + ); + const config = output.config; + expect(config.path).toBeDefined(); + + expect(config.maxGranularity).toEqual("hour"); + + const applied = config.path.execute({ id: namedNode("test"), quads }); + expect(applied.map((x) => x.id.value)).toEqual(["42"]); + }); + + test("Paged", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + + a tree:PageFragmentation; + tree:pageSize 42. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const output: Config = lens.execute({ id: namedNode("a"), quads }); + + expect(output.type.value).toBe("https://w3id.org/tree#PageFragmentation"); + const config = output.config; + expect(config.pageSize).toBe(42); + }); +}); + +describe("Bucketizer behavior", () => { + const quads = new Parser({ baseIRI: "" }).parse(SHAPES_TEXT); + + const shapes = extractShapes(quads); + const lens = shapes.lenses["https://w3id.org/tree#FragmentationStrategy"]; + + test("Paged", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + + a tree:PageFragmentation; + tree:pageSize 2. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const output: Config = lens.execute({ id: namedNode("a"), quads }); + + const orchestrator = new BucketizerOrchestrator([output]); + const stream = namedNode("MyStream"); + + const buckets: { [id: string]: Bucket } = {}; + const recordBuckets: string[] = []; + for (let member of [ + new Record({ id: namedNode("a1"), quads: [] }, stream), + new Record({ id: namedNode("a2"), quads: [] }, stream), + new Record({ id: namedNode("a3"), quads: [] }, stream), + ]) { + recordBuckets.push(...orchestrator.bucketize(member, buckets)); + } + + expect(recordBuckets).toEqual(["", "", "/page-1"]); + expect(buckets[""].root).toBeTruthy(); + expect(buckets[""].links.length).toBe(1); + expect(buckets["/page-1"].links.length).toBe(0); + }); + + test("Subject", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + a tree:SubjectFragmentation; + tree:fragmentationPath ( ). +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const output: Config = lens.execute({ id: namedNode("a"), quads }); + + const orchestrator = new BucketizerOrchestrator([output]); + const stream = namedNode("MyStream"); + + const buckets: { [id: string]: Bucket } = {}; + const recordBuckets: string[] = []; + for (let member of [ + new Record({ id: namedNode("a1"), quads: [] }, stream), + new Record({ id: namedNode("a2"), quads: [] }, stream), + new Record({ id: namedNode("a2"), quads: [] }, stream), + ]) { + recordBuckets.push(...orchestrator.bucketize(member, buckets)); + } + + expect(recordBuckets).toEqual(["/bucket-a1", "/bucket-a2", "/bucket-a2"]); + expect(buckets[""].root).toBeTruthy(); + expect(buckets[""].links.length).toBe(2); + }); + + test("Combined", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + a tree:SubjectFragmentation; + tree:fragmentationPath ( ). + + a tree:PageFragmentation; + tree:pageSize 2. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + const config1: Config = lens.execute({ id: namedNode("a"), quads }); + const config2: Config = lens.execute({ id: namedNode("b"), quads }); + + const orchestrator = new BucketizerOrchestrator([config1, config2]); + const stream = namedNode("MyStream"); + + const buckets: { [id: string]: Bucket } = {}; + const recordBuckets: string[] = []; + for (let member of [ + new Record({ id: namedNode("a1"), quads: [] }, stream), + new Record({ id: namedNode("a2"), quads: [] }, stream), + new Record({ id: namedNode("a2"), quads: [] }, stream), + new Record({ id: namedNode("a2"), quads: [] }, stream), + ]) { + recordBuckets.push(...orchestrator.bucketize(member, buckets)); + } + + expect(Object.keys(buckets).length).toBe(4) + expect(recordBuckets).toEqual([ + "/bucket-a1", + "/bucket-a2", + "/bucket-a2", + "/bucket-a2/page-1", + ]); + expect(buckets[""].root).toBeTruthy(); + expect(buckets[""].links.length).toBe(2); + expect(buckets["/bucket-a2"].links.length).toBe(1); + expect(buckets["/bucket-a2/page-1"].links.length).toBe(0); + expect(buckets["/bucket-a1"].links.length).toBe(0); + }); +}); diff --git a/test/processors.test.ts b/test/processors.test.ts index ea4a2c0..7256ece 100644 --- a/test/processors.test.ts +++ b/test/processors.test.ts @@ -3,6 +3,7 @@ import { extractProcessors, extractSteps, Source } from "@ajuvercr/js-runner"; describe("SDS processors tests", async () => { const pipeline = ` +@prefix tree: . @prefix js: . @prefix ws: . @prefix : . @@ -28,12 +29,20 @@ describe("SDS processors tests", async () => { test("js:Bucketize is properly defined", async () => { const processor = ` - [ ] a js:Bucketize; - js:dataInput ; - js:metadataInput ; - js:dataOutput ; - js:metadataOutput ; - js:bucketizeStrategy <./test.js>; + a js:Bucketize; + js:channels [ + js:dataInput ; + js:metadataInput ; + js:dataOutput ; + js:metadataOutput ; + ]; + js:bucketizeStrategy ( [ + a tree:SubjectFragmentation; + tree:fragmentationPath ( ); + ] [ + a tree:PageFragmentation; + tree:pageSize 2; + ] ); js:inputStreamId ; js:outputStreamId ; js:savePath <./save.js>. @@ -45,24 +54,29 @@ describe("SDS processors tests", async () => { type: "memory", }; - const { processors, quads, shapes: config } = await extractProcessors(source); + const { + processors, + quads, + shapes: config, + } = await extractProcessors(source); const proc = processors[0]; expect(proc).toBeDefined(); const argss = extractSteps(proc, quads, config); expect(argss.length).toBe(1); - expect(argss[0].length).toBe(8); + expect(argss[0].length).toBe(5); - const [[i, mi, o, mo, loc, save, si, so]] = argss; - testReader(i); - testReader(mi); - testWriter(o); - testWriter(mo); + const [[c, loc, save, si, so]] = argss; - expect(loc).toBe(process.cwd() + "/test.js"); - expect(si).toBe("http://testStream"); - expect(so).toBe("http://newStream"); + testReader(c.dataInput); + testReader(c.metadataInput); + testWriter(c.dataOutput); + testWriter(c.metadataOutput); + + expect(loc).toBeDefined() + expect(si.value).toBe("http://testStream"); + expect(so.value).toBe("http://newStream"); expect(save).toBe(process.cwd() + "/save.js"); await checkProc(proc.file, proc.func); @@ -82,14 +96,18 @@ describe("SDS processors tests", async () => { type: "memory", }; - const { processors, quads, shapes: config } = await extractProcessors(source); + const { + processors, + quads, + shapes: config, + } = await extractProcessors(source); const proc = processors[0]; expect(proc).toBeDefined(); const argss = extractSteps(proc, quads, config); expect(argss.length).toBe(1); - expect(argss[0].length).toBe(3); + expect(argss[0].length).toBe(6); const [[input, output, save]] = argss; testReader(input); @@ -113,7 +131,11 @@ describe("SDS processors tests", async () => { type: "memory", }; - const { processors, quads, shapes: config } = await extractProcessors(source); + const { + processors, + quads, + shapes: config, + } = await extractProcessors(source); const proc = processors[0]; expect(proc).toBeDefined(); @@ -146,7 +168,11 @@ describe("SDS processors tests", async () => { type: "memory", }; - const { processors, quads, shapes: config } = await extractProcessors(source); + const { + processors, + quads, + shapes: config, + } = await extractProcessors(source); const proc = processors[0]; expect(proc).toBeDefined(); @@ -167,15 +193,15 @@ describe("SDS processors tests", async () => { function testReader(arg: any) { expect(arg).toBeInstanceOf(Object); - expect(arg.channel).toBeDefined(); - expect(arg.channel.id).toBeDefined(); + // expect(arg.config.channel).toBeDefined(); + // expect(arg.config.channel.id).toBeDefined(); expect(arg.ty).toBeDefined(); } function testWriter(arg: any) { expect(arg).toBeInstanceOf(Object); - expect(arg.channel).toBeDefined(); - expect(arg.channel.id).toBeDefined(); + // expect(arg.config.channel).toBeDefined(); + // expect(arg.config.channel.id).toBeDefined(); expect(arg.ty).toBeDefined(); } diff --git a/test/shapes.test.ts b/test/shapes.test.ts new file mode 100644 index 0000000..448b5d5 --- /dev/null +++ b/test/shapes.test.ts @@ -0,0 +1,179 @@ +import { describe, expect, test } from "@jest/globals"; +import { extractShapes } from "rdf-lens"; +import { DataFactory, Parser } from "n3"; +import { CBDShapeExtractor } from "extract-cbd-shape"; + +import { Bucket, Extractor, SHAPES_TEXT } from "../src/utils/index"; + +const { namedNode, blankNode, literal, quad } = DataFactory; + +describe("Extracting defined shapes", async () => { + const quads = new Parser({ baseIRI: "" }).parse(SHAPES_TEXT); + + const shapes = extractShapes(quads); + + test("extracts relation", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + a <#Relation>; + sds:relationType tree:GreaterThanRelation ; + sds:relationBucket ; + sds:relationValue 1; + sds:relationPath ex:x. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + + const relation = shapes.lenses["#Relation"].execute({ + id: namedNode("a"), + quads, + }); + + const keys = Object.keys(relation); + expect(keys).toContain("type"); + expect(keys).toContain("target"); + expect(keys).toContain("value"); + expect(keys).toContain("path"); + }); + + test("extracts bucket", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + sds:relation ; + sds:isRoot true. + a <#Relation>; + sds:relationType tree:GreaterThanRelation ; + sds:relationBucket ; + sds:relationValue 1; + sds:relationPath ex:x. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + + const bucket = shapes.lenses["#Bucket"].execute({ + id: namedNode("bucket"), + quads, + }); + + const keys = Object.keys(bucket); + expect(keys).toContain("id"); + expect(keys).toContain("links"); + expect(keys).toContain("root"); + expect(bucket.root).toBe(true); + }); + + test("extracts record", () => { + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + a sds:Record; + sds:stream <#stream>; + sds:bucket ; + sds:payload [ ]. + + sds:relation . + a <#Relation>; + sds:relationType tree:GreaterThanRelation ; + sds:relationBucket ; + sds:relationValue 1; + sds:relationPath ex:x. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + + const record = shapes.lenses["#Record"].execute({ + id: namedNode("record"), + quads, + }); + + const keys = Object.keys(record); + expect(keys).toContain("bucket"); + expect(keys).toContain("stream"); + expect(keys).toContain("data"); + }); + + test("defined shapes", async () => { + expect([...Object.keys(shapes.lenses)]).toContain("#Relation"); + expect([...Object.keys(shapes.lenses)]).toContain("#Bucket"); + expect([...Object.keys(shapes.lenses)]).toContain("#Record"); + }); + + test("extract sds records", async () => { + const extractor = new Extractor(new CBDShapeExtractor()); + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + a sds:Record; + sds:stream <#stream>; + sds:bucket ; + sds:payload [ + 42; + 45; + ]. + + sds:relation . + + sds:relationType tree:GreaterThanRelation ; + sds:relationBucket ; + sds:relationValue 1; + sds:relationPath ex:x. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + + const out = await extractor.parse_records(quads); + expect(out.length).toBe(1); + expect(out[0].data.quads.length).toBe(2); + + expect(out[0].bucket).toBeInstanceOf(Bucket); + }); + + test("extract deep buckets", async () => { + const extractor = new Extractor(new CBDShapeExtractor()); + const quadsStr = ` +@prefix tree: . +@prefix ex: . +@prefix sds: . + + a sds:Record; + sds:stream <#stream>; + sds:bucket ; + sds:payload [ + 42; + 45; + ]. + + sds:relation ; a sds:Bucket. + + sds:relationType tree:GreaterThanRelation ; + sds:relationBucket ; + sds:relationValue 1; + sds:relationPath ex:x. + + sds:relation ; a sds:Bucket. + + sds:relationType tree:GreaterThanRelation ; + sds:relationBucket ; + sds:relationValue 1; + sds:relationPath ex:x. +`; + const quads = new Parser({ baseIRI: "" }).parse(quadsStr); + + const out = await extractor.parse_records(quads); + expect(out.length).toBe(1); + const rec = out[0]; + expect(rec.data.quads.length).toBe(2); + expect(rec.bucket).toBeInstanceOf(Bucket); + expect(rec.bucket!.links.length).toBe(0); + expect(rec.bucket!.parent).toBeDefined(); + expect(rec.bucket!.parent!.id.value).toBe("bucket2"); + expect(rec.bucket!.parent!.parent).toBeDefined(); + expect(rec.bucket!.parent!.parent!.id.value).toBe("bucket"); + }); +});