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Sequence of the Amino Acid descriptors in p2rank #64

Answered by rdk
Sghl1 asked this question in Q&A
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@Sghl1 in this case the root of a problem seems to be in the fact that not all residues of the uniprot sequence are modelled (i.e. present in the PDB structure), which is a common occurence in the PDB. Another fact is that the sequence visualizers in both https://www.rcsb.org/sequence/1O86 and https://prankweb.cz/ show on the top a line with numbers that represent a simple position in the sequence from 1 to n.

The sequence visualization in PDB https://www.rcsb.org/sequence/1O86 displays the Uniprot sequence overlaid with PDB sequence and first 3 residues are not present in the PDB sequence (see UNMODELED row).

I'd recommend to disregard whatever sequence numbers are displayed in the seque…

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