From 17fce974fe960bdcc49fdf1678cd58971d1fe568 Mon Sep 17 00:00:00 2001
From: nsheff <nsheff@users.noreply.github.com>
Date: Thu, 4 Nov 2021 12:28:20 -0400
Subject: [PATCH 1/4] remove use_2to3, simplify markdown readme in setup

---
 setup.py | 15 ++-------------
 1 file changed, 2 insertions(+), 13 deletions(-)

diff --git a/setup.py b/setup.py
index 4d484ec..df3dfa3 100644
--- a/setup.py
+++ b/setup.py
@@ -15,22 +15,13 @@
 
 # Additional keyword arguments for setup().
 extra = {"install_requires": DEPENDENCIES}
-if sys.version_info >= (3,):
-    extra["use_2to3"] = True
 
 with open("refgenconf/_version.py", "r") as versionfile:
     version = versionfile.readline().split()[-1].strip("\"'\n")
 
 # Handle the pypi README formatting.
-try:
-    import pypandoc
-
-    long_description = pypandoc.convert_file("README.md", "rst")
-    msg = "\033[032mPandoc conversion succeeded.\033[0m"
-except (IOError, ImportError, OSError):
-    msg = "\033[0;31mWarning: pandoc conversion failed!\033[0m"
-    long_description = open("README.md").read()
-
+with open('README.md') as f:
+    long_description = f.read()
 
 setup(
     name=PACKAGE_NAME,
@@ -60,5 +51,3 @@
     author=u"Nathan Sheffield, Vince Reuter, Michal Stolarczyk",
     **extra
 )
-
-print(msg)

From de300841f7e48af5acba16c64eaec4827e6cf8bf Mon Sep 17 00:00:00 2001
From: nsheff <nsheff@users.noreply.github.com>
Date: Thu, 4 Nov 2021 12:29:46 -0400
Subject: [PATCH 2/4] version, changelog

---
 docs/changelog.md      | 5 +++++
 refgenconf/_version.py | 2 +-
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/docs/changelog.md b/docs/changelog.md
index 7a9b4e1..c38168d 100644
--- a/docs/changelog.md
+++ b/docs/changelog.md
@@ -2,6 +2,11 @@
 
 This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format.
 
+## [0.12.2] - 2021-11-04
+
+### Fixed
+- Removed use_2to3 for setuptools 58 compatibility.
+
 ## [0.12.1] - 2021-10-11
 
 ### Fixed
diff --git a/refgenconf/_version.py b/refgenconf/_version.py
index def467e..76da4a9 100644
--- a/refgenconf/_version.py
+++ b/refgenconf/_version.py
@@ -1 +1 @@
-__version__ = "0.12.1"
+__version__ = "0.12.2"

From eaa9183659078129741ad259669b39bcc367d7c6 Mon Sep 17 00:00:00 2001
From: nsheff <nsheff@users.noreply.github.com>
Date: Thu, 4 Nov 2021 12:30:41 -0400
Subject: [PATCH 3/4] require updated yacman

---
 requirements/requirements-all.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/requirements/requirements-all.txt b/requirements/requirements-all.txt
index 3824ac0..8c23758 100644
--- a/requirements/requirements-all.txt
+++ b/requirements/requirements-all.txt
@@ -4,5 +4,5 @@ pyfaidx
 pyyaml
 requests
 rich>=9.0.1
-yacman>=0.8.2
+yacman>=0.8.3
 tqdm

From 4c1331dfd5c1704dc7a29e2b7e5bacc15af17616 Mon Sep 17 00:00:00 2001
From: nsheff <nsheff@users.noreply.github.com>
Date: Thu, 4 Nov 2021 12:31:04 -0400
Subject: [PATCH 4/4] lint

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index df3dfa3..e44359e 100644
--- a/setup.py
+++ b/setup.py
@@ -20,7 +20,7 @@
     version = versionfile.readline().split()[-1].strip("\"'\n")
 
 # Handle the pypi README formatting.
-with open('README.md') as f:
+with open("README.md") as f:
     long_description = f.read()
 
 setup(