diff --git a/README_seqcolapi.md b/README_seqcolapi.md
index dc2ae8c..dc2178e 100644
--- a/README_seqcolapi.md
+++ b/README_seqcolapi.md
@@ -9,35 +9,44 @@ This repository contains:
 
 ### Run locally for development
 
-To run a local server with a **local database**:
-```
-source servers/localhost/dev_local.env
-uvicorn seqcolapi.main:app --reload --port 8100
-```
+First, configure env vars:
+- To run a local server with a **local database**:`source servers/localhost/dev_local.env`
+- To run a local server with **the production database**:`source servers/seqcolapi.databio.org/production.env`
+
+Then, run service:
 
-To run a local server with **the production database**:
 ```
-source servers/seqcolapi.databio.org/production.env
 uvicorn seqcolapi.main:app --reload --port 8100
 ```
 
 ### Running with docker
 
-To build the docker file:
+To build the docker file, from the root of this repository:
 
+First you build the general-purpose image
 
 ```
-docker build --no-cache -t scim .
+docker build -f deployment/dockerhub/Dockerfile -t databio/seqcolapi seqcolapi
+```
+
+Next you build the wrapped image (this just wraps the config into the app):
+
+```
+docker build -f deployment/seqcolapi.databio.org/Dockerfile -t seqcolapi.databio.org deployment/seqcolapi.databio.org
 ```
 
 To run in a container:
 
 ```
-export POSTGRES_PASSWORD=`pass aws/rds_postgres` 
+source deployment/seqcolapi.databio.org/production.env
+docker run --rm -p 8000:80 --name seqcolapi seqcolapi.databio.org
+```
+
+
 docker run --rm -p 8000:8000 --name sccon \
   --env "POSTGRES_PASSWORD" \
   --volume $CODE/seqcolapi.databio.org/config/seqcolapi.yaml:/config.yaml \
-  scim seqcolapi serve -c /config.yaml -p 8000
+  scim 
 ```
 
 To deploy container to dockerhub:
diff --git a/deployment/dockerhub/Dockerfile b/deployment/dockerhub/Dockerfile
new file mode 100644
index 0000000..6b6e8b4
--- /dev/null
+++ b/deployment/dockerhub/Dockerfile
@@ -0,0 +1,11 @@
+FROM tiangolo/uvicorn-gunicorn:python3.11-slim
+LABEL authors="Nathan Sheffield"
+RUN pip install https://github.com/databio/yacman/archive/dev.zip
+RUN pip install https://github.com/refgenie/refget/archive/seqcolapi.zip
+
+COPY requirements/requirements-seqcolapi.txt requirements/requirements-seqcolapi.txt
+RUN pip install -r requirements/requirements-seqcolapi.txt --no-cache-dir
+
+COPY . /app/seqcolapi
+
+CMD ["uvicorn", "seqcolapi.main:app", "--host", "0.0.0.0", "--port", "80"]
diff --git a/servers/localhost/dev_local.env b/deployment/localhost/dev_local.env
similarity index 100%
rename from servers/localhost/dev_local.env
rename to deployment/localhost/dev_local.env
diff --git a/servers/localhost/seqcolapi.yaml b/deployment/localhost/seqcolapi.yaml
similarity index 100%
rename from servers/localhost/seqcolapi.yaml
rename to deployment/localhost/seqcolapi.yaml
diff --git a/deployment/seqcolapi.databio.org/Dockerfile b/deployment/seqcolapi.databio.org/Dockerfile
new file mode 100644
index 0000000..7fcc959
--- /dev/null
+++ b/deployment/seqcolapi.databio.org/Dockerfile
@@ -0,0 +1,3 @@
+FROM databio/seqcolapi
+COPY seqcolapi.yaml /seqcolapi_config.yaml
+ENV SEQCOLAPI_CONFIG /seqcolapi_config.yaml
diff --git a/servers/seqcolapi.databio.org/primary_task_def.json b/deployment/seqcolapi.databio.org/primary_task_def.json
similarity index 100%
rename from servers/seqcolapi.databio.org/primary_task_def.json
rename to deployment/seqcolapi.databio.org/primary_task_def.json
diff --git a/servers/seqcolapi.databio.org/production.env b/deployment/seqcolapi.databio.org/production.env
similarity index 81%
rename from servers/seqcolapi.databio.org/production.env
rename to deployment/seqcolapi.databio.org/production.env
index 7300d2f..5ddb740 100644
--- a/servers/seqcolapi.databio.org/production.env
+++ b/deployment/seqcolapi.databio.org/production.env
@@ -6,4 +6,4 @@ export POSTGRES_TABLE="seqcol"
 
 export SEQCOLAPI_PORT="5432"
 export SERVER_ENV="production"
-export SEQCOLAPI_CONFIG="servers/seqcolapi.databio.org/seqcolapi.yaml"
+export SEQCOLAPI_CONFIG="deployment/seqcolapi.databio.org/seqcolapi.yaml"
diff --git a/servers/seqcolapi.databio.org/seqcolapi.yaml b/deployment/seqcolapi.databio.org/seqcolapi.yaml
similarity index 100%
rename from servers/seqcolapi.databio.org/seqcolapi.yaml
rename to deployment/seqcolapi.databio.org/seqcolapi.yaml
diff --git a/refget/seqcol.py b/refget/seqcol.py
index ba6ff56..5b81f72 100644
--- a/refget/seqcol.py
+++ b/refget/seqcol.py
@@ -1,6 +1,5 @@
 import henge
 import logging
-import yacman
 
 from itertools import compress
 
@@ -12,26 +11,6 @@
 henge.ITEM_TYPE = "_item_type"
 
 
-class SeqColConf(yacman.YAMLConfigManager):
-    """
-    Simple configuration manager object for SeqColHenge.
-    """
-
-    def __init__(
-        self,
-        entries={},
-        filepath=None,
-        yamldata=None,
-        writable=False,
-        wait_max=60,
-        skip_read_lock=False,
-    ):
-        filepath = yacman.select_config(
-            config_filepath=filepath, config_env_vars=["SEQCOLAPI_CONFIG"], config_name="seqcol"
-        )
-        super(SeqColConf, self).__init__(entries, filepath, yamldata, writable)
-
-
 class SeqColHenge(henge.Henge):
     """
     Extension of henge that accommodates collections of sequences.
diff --git a/seqcolapi/__init__.py b/seqcolapi/__init__.py
index c2a5a43..e69de29 100644
--- a/seqcolapi/__init__.py
+++ b/seqcolapi/__init__.py
@@ -1,3 +0,0 @@
-import logmuse
-
-logmuse.init_logger("seqcolapi")
diff --git a/seqcolapi/cli.py b/seqcolapi/cli.py
deleted file mode 100644
index f91d06c..0000000
--- a/seqcolapi/cli.py
+++ /dev/null
@@ -1,59 +0,0 @@
-from ubiquerg import VersionInHelpParser
-
-from .const import PKG_NAME, seqcolapi_version
-
-
-def build_parser():
-    """
-    Build argument parser
-
-    :return argparse.ArgumentParser
-    """
-    banner = "%(prog)s - API for sequence collections"
-    additional_description = "For subcommand-specific options, type: '%(prog)s <subcommand> -h'"
-    additional_description += "\nhttps://github.com/regenie/seqcolapi"
-
-    parser = VersionInHelpParser(prog=PKG_NAME, description=banner, epilog=additional_description)
-
-    parser.add_argument(
-        "-V",
-        "--version",
-        action="version",
-        version="%(prog)s {v}".format(v=seqcolapi_version),
-    )
-
-    msg_by_cmd = {"serve": "run the server"}
-
-    subparsers = parser.add_subparsers(dest="command")
-
-    def add_subparser(cmd, description):
-        return subparsers.add_parser(cmd, description=description, help=description)
-
-    sps = {}
-    # add arguments that are common for all subparsers
-    for cmd, desc in msg_by_cmd.items():
-        sps[cmd] = add_subparser(cmd, desc)
-        sps[cmd].add_argument(
-            "-c",
-            "--config",
-            required=True,
-            dest="config",
-            help="Path to the seqcolapi config file (YAML).",
-        )
-        sps[cmd].add_argument(
-            "-d",
-            "--dbg",
-            action="store_true",
-            dest="debug",
-            help="Set logger verbosity to debug",
-        )
-    # add subparser-specific arguments
-    sps["serve"].add_argument(
-        "-p",
-        "--port",
-        dest="port",
-        type=int,
-        help="The port the webserver should be run on.",
-        default=None,
-    )
-    return parser
diff --git a/seqcolapi/main.py b/seqcolapi/main.py
index e10ea69..18005e3 100644
--- a/seqcolapi/main.py
+++ b/seqcolapi/main.py
@@ -1,7 +1,6 @@
 import henge
 import json
 import logging
-import logmuse
 import os
 import sys
 import uvicorn
@@ -17,12 +16,15 @@
 from starlette.staticfiles import StaticFiles
 from typing import Union
 
-from .cli import build_parser
 from .const import *
 from .scconf import RDBDict
 from .examples import *
 
-from refget import SeqColConf, SeqColHenge, format_itemwise
+from refget import SeqColHenge, format_itemwise
+from yacman import select_config, FutureYAMLConfigManager as YAMLConfigManager
+
+class SeqColConf(YAMLConfigManager):
+    pass
 
 global _LOGGER
 
@@ -124,7 +126,7 @@ def create_globals(scconf: yacman.YAMLConfigManager):
 def main(injected_args=None):
     # Entry point for running from console_scripts, installed package
     parser = build_parser()
-    parser = logmuse.add_logging_options(parser)
+    # parser = logmuse.add_logging_options(parser)
     args = parser.parse_args()
     if injected_args:
         args.__dict__.update(injected_args)
@@ -133,10 +135,10 @@ def main(injected_args=None):
         print("No subcommand given")
         sys.exit(1)
 
-    _LOGGER = logmuse.logger_via_cli(args, make_root=True)
+    # _LOGGER = logmuse.logger_via_cli(args, make_root=True)
     _LOGGER.info(f"args: {args}")
     if "config" in args and args.config is not None:
-        scconf = SeqColConf(filepath=args.config)
+        scconf = SeqColConf.from_yaml_file(args.config)
         create_globals(scconf)
         app.state.schenge = schenge
         port = args.port or scconf.exp["server"]["port"]
@@ -149,7 +151,8 @@ def main(injected_args=None):
 if __name__ != "__main__":
     # Entrypoint for running through uvicorn CLI (dev)
     if os.environ.get("SEQCOLAPI_CONFIG") is not None:
-        scconf = SeqColConf()
+        _LOGGER.info(f"Loading config from SEQCOLAPI_CONFIG: {os.environ.get('SEQCOLAPI_CONFIG')}")
+        scconf = SeqColConf.from_yaml_file(os.environ.get('SEQCOLAPI_CONFIG'))
         create_globals(scconf)
         app.state.schenge = schenge
     else:
diff --git a/requirements/requirements-seqcolapi.txt b/seqcolapi/requirements/requirements-seqcolapi.txt
similarity index 88%
rename from requirements/requirements-seqcolapi.txt
rename to seqcolapi/requirements/requirements-seqcolapi.txt
index e658e82..d9997e6 100644
--- a/requirements/requirements-seqcolapi.txt
+++ b/seqcolapi/requirements/requirements-seqcolapi.txt
@@ -2,7 +2,7 @@ aiofiles
 fastapi
 henge>=0.2.1
 jinja2
-logmuse>=0.2
+pipestat
 psycopg2-binary
 refget
 uvicorn>=0.7.1
diff --git a/servers/seqcolapi.databio.org/Dockerfile b/servers/seqcolapi.databio.org/Dockerfile
deleted file mode 100644
index fdbeb88..0000000
--- a/servers/seqcolapi.databio.org/Dockerfile
+++ /dev/null
@@ -1,5 +0,0 @@
-FROM databio/seqcolapi
-
-COPY seqcolapi.yaml /seqcolapi_config.yaml
-
-ENTRYPOINT ["seqcolapi", "serve", "-c", "/seqcolapi_config.yaml"]