Merge branch 'master' into public

refresh-bio · Feb 9, 2024 · d6c24dc · d6c24dc
2 parents 9cd471f + fdd179e
commit d6c24dc
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diff --git a/kmc_api/kmc_file.cpp b/kmc_api/kmc_file.cpp
@@ -4,8 +4,8 @@
 
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "mmer.h"

diff --git a/kmc_api/kmc_file.h b/kmc_api/kmc_file.h
@@ -4,8 +4,8 @@
 
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
  */
 
 #ifndef _KMC_FILE_H

diff --git a/kmc_api/kmer_api.cpp b/kmc_api/kmer_api.cpp
@@ -4,8 +4,8 @@
 
   Authors: Sebastian Deorowicz and Agnieszka Debudaj-Grabysz
 
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "kmer_api.h"

diff --git a/kmc_api/kmer_api.h b/kmc_api/kmer_api.h
@@ -4,8 +4,8 @@ The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
 
 Authors: Sebastian Deorowicz and Agnieszka Debudaj-Grabysz
 
-Version: 3.2.3
-Date   : 2023-12-08
+Version: 3.2.4
+Date   : 2024-02-09
 */
 
 #ifndef _KMER_API_H

diff --git a/kmc_api/kmer_defs.h b/kmc_api/kmer_defs.h
@@ -4,8 +4,8 @@
 
   Authors: Sebastian Deorowicz and Agnieszka Debudaj-Grabysz
 
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 
@@ -14,8 +14,8 @@
 
 #include <cinttypes>
 
-#define KMC_VER		"3.2.3"
-#define KMC_DATE	"2023-12-08"
+#define KMC_VER		"3.2.4"
+#define KMC_DATE	"2024-02-09"
 
 #ifndef MIN
 #define MIN(x,y)	((x) < (y) ? (x) : (y))

diff --git a/kmc_api/mmer.cpp b/kmc_api/mmer.cpp
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "../kmc_api/mmer.h"

diff --git a/kmc_api/mmer.h b/kmc_api/mmer.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _MMER_H

diff --git a/kmc_core/bam_utils.h b/kmc_core/bam_utils.h
@@ -4,8 +4,8 @@ The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
 
 Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-Version: 3.2.3
-Date   : 2023-12-08
+Version: 3.2.4
+Date   : 2024-02-09
 */
 
 #ifndef _BAM_UTILS_H

diff --git a/kmc_core/binary_reader.h b/kmc_core/binary_reader.h
@@ -4,8 +4,8 @@ The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
 
 Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-Version: 3.2.3
-Date   : 2023-12-08
+Version: 3.2.4
+Date   : 2024-02-09
 */
 
 #ifndef _BINARY_READER_H

diff --git a/kmc_core/bkb_merger.h b/kmc_core/bkb_merger.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _HBH_MERGER_H

diff --git a/kmc_core/bkb_reader.cpp b/kmc_core/bkb_reader.cpp
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "bkb_reader.h"

diff --git a/kmc_core/bkb_reader.h b/kmc_core/bkb_reader.h
@@ -5,8 +5,8 @@ The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
 
 Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-Version: 3.2.3
-Date   : 2023-12-08
+Version: 3.2.4
+Date   : 2024-02-09
 */
 
 #ifndef _BKB_READER_H_

diff --git a/kmc_core/bkb_sorter.h b/kmc_core/bkb_sorter.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _BKB_SORTER_H

diff --git a/kmc_core/bkb_subbin.h b/kmc_core/bkb_subbin.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _BKB_SUBBIN_H

diff --git a/kmc_core/bkb_uncompactor.h b/kmc_core/bkb_uncompactor.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _BKB_UNCOMPACTOR_H

diff --git a/kmc_core/bkb_writer.cpp b/kmc_core/bkb_writer.cpp
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "bkb_writer.h"

diff --git a/kmc_core/bkb_writer.h b/kmc_core/bkb_writer.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _BKB_WRITER_H

diff --git a/kmc_core/cpu_info.cpp b/kmc_core/cpu_info.cpp
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "cpu_info.h"

diff --git a/kmc_core/cpu_info.h b/kmc_core/cpu_info.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _CPU_INFO_

diff --git a/kmc_core/defs.h b/kmc_core/defs.h
@@ -4,17 +4,17 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _DEFS_H
 #define _DEFS_H
 
 #include <cinttypes>
 
-#define KMC_VER		"3.2.3"
-#define KMC_DATE	"2023-12-08"
+#define KMC_VER		"3.2.4"
+#define KMC_DATE	"2024-02-09"
 
 #define _CRT_SECURE_NO_WARNINGS
 

diff --git a/kmc_core/fastq_reader.cpp b/kmc_core/fastq_reader.cpp
@@ -4,8 +4,8 @@
 
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 #include <algorithm>
 #include "defs.h"

diff --git a/kmc_core/fastq_reader.h b/kmc_core/fastq_reader.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _FASTQ_READER_H

diff --git a/kmc_core/first_dispatch.h b/kmc_core/first_dispatch.h
@@ -4,8 +4,8 @@ The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
 
 Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-Version: 3.2.3
-Date   : 2023-12-08
+Version: 3.2.4
+Date   : 2024-02-09
 */
 #ifndef _FIRST_DISPATCH_H
 #define _FIRST_DISPATCH_H

diff --git a/kmc_core/intr_copy.h b/kmc_core/intr_copy.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _INTR_COPY_H

diff --git a/kmc_core/kb_collector.cpp b/kmc_core/kb_collector.cpp
@@ -4,8 +4,8 @@ The homepage of the KMC project is http://sun.aei.polsl.pl/kmc
 
 Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-Version: 3.2.3
-Date   : 2023-12-08
+Version: 3.2.4
+Date   : 2024-02-09
 */
 
 #include "kb_collector.h"

diff --git a/kmc_core/kb_collector.h b/kmc_core/kb_collector.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _KB_COLLECTOR_H

diff --git a/kmc_core/kb_completer.cpp b/kmc_core/kb_completer.cpp
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 #include <algorithm>
 #include <numeric>

diff --git a/kmc_core/kb_completer.h b/kmc_core/kb_completer.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 #ifndef _KB_COMPLETER_H
 #define _KB_COMPLETER_H

diff --git a/kmc_core/kb_reader.h b/kmc_core/kb_reader.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _KB_READER_H

diff --git a/kmc_core/kb_sorter.h b/kmc_core/kb_sorter.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _KB_SORTER_H

diff --git a/kmc_core/kb_storer.cpp b/kmc_core/kb_storer.cpp
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 #include <algorithm>
 #include <numeric>

diff --git a/kmc_core/kb_storer.h b/kmc_core/kb_storer.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _KB_STORER_H

diff --git a/kmc_core/kmc.h b/kmc_core/kmc.h
@@ -4,8 +4,8 @@
   
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
   
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #ifndef _KMC_H

diff --git a/kmc_core/kmc_runner.cpp b/kmc_core/kmc_runner.cpp
@@ -4,8 +4,8 @@
 
   Authors: Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Marek Kokot
 
-  Version: 3.2.3
-  Date   : 2023-12-08
+  Version: 3.2.4
+  Date   : 2024-02-09
 */
 
 #include "kmc_runner.h"