Version 1.0

IDX_build/Makefile

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+CC=g++
+CFLAGS=-O3 -m64  -std=c++0x  -fopenmp 
+EXECUTABLE=MuGI_build
+LIB=-ltbb
+LDFLAGS=
+SOURCES=data.cpp main.cpp bit_vectors.cpp  core.cpp  fasta.cpp  sa.cpp   sa2.cpp  sa_variants.cpp  suffix2.cpp  variant_list.cpp coding.cpp        sa1.cpp  sa3.cpp  suffix1.cpp      suffix3.cpp  vcf.cpp
+
+OBJECTS=$(SOURCES:.cpp=.o)
+
+all: $(SOURCES) $(EXECUTABLE)
+
+$(EXECUTABLE): $(OBJECTS) 
+	$(CC) $(CFLAGS) $(OBJECTS) $(LIB) -o $@
+	cp $(EXECUTABLE) ../
+
+.cpp.o:
+	$(CC) $(CFLAGS) -c  $< -o $@
+
+clean:
+	rm $(OBJECTS)
+	rm $(EXECUTABLE)
+	rm ../$(EXECUTABLE)

IDX_build/README

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+To build the INDEX_build sources, the Intel Threading Building Blocks library is needed. 
+
+It can be downloaded from: https://www.threadingbuildingblocks.org
+
+Example instuction to install the included tbb:
+
+cd tbb/
+make clean
+make
+cd build/linux_intel64_gcc_cc4.6.2_libc2.14.90_kernel3.6.10_release/
+source tbbvars.sh  #source tbbvars.csh
+cd ../../../
+
+More instruction on how to use the library are also available at the webpage.
+
+The LIB variable in the Makefile should point to the working library.
+
+
+
+
+
+