README.md

MultiAtlasLabelFusionValidation

This is a nipype development page for multi atlas label fusion validation study. This nipype works with BRAINSTools build.

Directories

./src

All the source files

• ./src/nipype
  • prepareMultiLabel.py: Command line python module to do preprocessing including Brain Clip and affine registration to a given template atlas.

Nipype scripts

./src/script

Scripts other than nipype

• generateInputSpecification.sh: A utility script to generate list of files for prepareMultiLabel.py module. This has to be modified as necessary.

./test

Test files that can be used for the usage reference.

• prepareMultiLabel.sh
• testList.csv
• testListIncompleteSet.csv

Usage with Example

  cd ./test
  bash prepareMultiLabel.sh

TO DO

1. make it complete nipype for Batch Processing