0.8.0

Added:

• the option to specify a different database for the expense and presentation
  items when running a_presentation.
• scripts (profile_regolith and profile_helper_gui) that run regolith and helper_gui with the python cProfiler. Used for debugging and code development.
• universally unique IDs added to all tasks, and now listed by todo lister
• milestone lister now prints the uuids of the milestones
• additional tests for c+p, annual-activity and grant-report builders
• repo_info_complete in tools to check the existence of remote repositories before operating on them
• token_info_complete in tools to check for the existence of the user's private API authentication token
• create_repo in tools to create a repository in a given remote repository
• functionality to presentation helper that creates a repo by calling on create_repo function in tools when no_talk_repo box is not checked
• no_repo box/option added to presentation helper gui
• no_in_cv option for employment entries that they don't appear in cv's and resumes
• get_appointments() function
• effort reporting report shows each person's loadings by grant by month over a fixed period
• new functionality that allows general kwargs to be passed to builders from the command line
• Builder for building formal letters with To/From/Subject etc. fields
• presentation_url field to presentation in presentations
• functionality to presentation adder to allow the presentation url to be added
• publist can be built specifying a facility where the measurements were made
• supplementary_info_urls field to citations and projecta
• u_milesone now x's out all the unfinished todo items when it "finishes" a milestone
• u_milestone uses "--milestone_uuid" option to select which milestone to update
• all milestones now have uuids
• Add the command "regolith --version" to print the version number.

Changed:

• default milestone added by a_projectum is now more useful. It duplicates the kickoff meeting

• added empty notes field and currency type USD to template expenses in
  a_expenses and a_presentation

• None

• Better debugging in get_dates() when date information is missing by printing the id of the offending document

• Order of tests in helper_tests so all the updaters are at the end

• grants lister prints in columns and is grouped by the unit that administers the grant

• amounts in attestations are limited to 2-sig-figs

• Order of CLI args in u_milestone for greater ease of use

• prum finisher now adds end-dates to all milestones. If they have an end-date
  it leaves the date as is, otherwise it adds the prum end-date

• Abstract lister now outputs the meeting name and basic information about the meeting of the presentation

• Abstract lister now lists in date order

• grant report builder updated to run without needing to specify report
  beginning and ending dates. Default dates are taken as being the start
  date of the grant and today's date if not specified at runtime.

• prum lister now lists paused projecta as well as current as default behavior.
  selecting --current gives just active prums

• prum lister now appends the prum status even in non-verbose mode

• Template prum now has better advice for how to fill it when made by a_projectum

• reading list builder now builds reading lists from the citations database by
  using the tags field for each paper

• tests of tex and html files now compare outputs line by line
  and ignore variables paths that have proven to be unstable

• Standardized CLI option names by replacing the underscore with a hyphen in the
  following: --end_date, --begin_-date, --submitted_date, --no_cal, --due_date,
  --group_members, --other_agencies, --months_academic, --months_summer,
  --assigned_to, --assigned_by, --loc_inst, --kv_filter, --return_fields,
  --helper_help, --school_aka, --school_name, --school-id, --dept_aka, --dept_name,
  --dept_id, --estimated_duration.

• Reformatted printing of todos to make the order clearer

• "--projectum_id" has been changed from a required arg to an optional arg

• u_milestone uses "--projectum_id" option to add a new milestone to a prum

• Updater helpers now only open the specified database, not all the databases in rc.databases. If they don't find the collection in that database they will report a failure to update.

Deprecated:

• None

Removed:

• None
• todo lister no longer lists milestones from projecta. this will be handled differently moving forward
• the u_milestone functionality that lists a prum's milestones has been removed
• "--index", "--verbose", and "--current" optional args have been removed

Fixed:

• load all collections bug introduced accidentally when working on mongo backend
• None
• monthly loadings now handles edge cases better
• broken error message for missing institution in dereference_institution function
• dereference_institutions will always return a department now
• fixed typo in postdoc advisee getter
• date handling for end-dates of current students/postdocs
• updated to raw strings places where they should be to propagate escaped special
  characters, e.g., latex_safe
• fixed formatting UserWarnings in makeappointments helper
• remove bug that wrong list item taken from calendar.daterange() was being
  used in l_currentappointments helper
• manuscript review new correctly prints freewrite field
• prum lister now correctly finds due_date
• bug in adder that builds reading lists from tags in citations making duplicate entries
• Changed how the reading-list builder fetches the references from Crossref so that it only fetches each needed reference once.
• xonsh input_hooks now explicitly has execer=None instead of blank parens to satisfy xonsh deprecation warning
• publist builder now produces bib files before filtering so we don't accidentally build a publist with an incomplete
  bib file

Security:

• None