small fixes

replikation · Feb 13, 2024 · 96d12cd · 96d12cd
1 parent 1d3ed88
commit 96d12cd
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/configs/node.config b/configs/node.config
@@ -17,7 +17,7 @@ process {
     withLabel: seqkit           { cpus = 2 ; memory = '8 GB' }
     withLabel: sourmash         { cpus = 8 ; memory = '32 GB' }
     withLabel: ubuntu           { cpus = 4; memory = '4 GB' }
-    withLabel: upsetr           { cpus = 1; memory = '4 GB' }
+    withLabel: upsetr           { cpus = 2; memory = '8 GB' }
     withLabel: vibrant          { cpus = 4; memory = '8 GB' }
     withLabel: virfinder        { cpus = 24; memory = '32 GB' }
     withLabel: virnet           { cpus = 24; memory = '32 GB' }

diff --git a/workflows/process/phage_tax_classification/sourmash_for_tax.nf b/workflows/process/phage_tax_classification/sourmash_for_tax.nf
@@ -9,6 +9,8 @@ process sourmash_for_tax {
       tuple val(name), path("${name}_tax-class.tsv"), emit: tax_class_ch optional true
     shell:
       """
+      set -euxo pipefail
+      
       for fastafile in ${fasta_dir}/*.fa; do
         sourmash sketch dna -p k=21,scaled=100 \${fastafile}
       done