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updated local node config
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mult1fractal committed Jul 31, 2024
1 parent d9d70f1 commit a0749ba
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Showing 3 changed files with 6 additions and 3 deletions.
2 changes: 2 additions & 0 deletions configs/local.config
Original file line number Diff line number Diff line change
Expand Up @@ -28,4 +28,6 @@ process {
withLabel: phigaro { cpus = params.cores }
withLabel: seeker { cpus = params.cores }
withLabel: virsorter2 { cpus = params.cores }
withLabel: pharokka { cpus = params.cores }

}
3 changes: 2 additions & 1 deletion configs/node.config
Original file line number Diff line number Diff line change
Expand Up @@ -25,5 +25,6 @@ process {
withLabel: noDocker { cpus = 4; memory = '4 GB' }
withLabel: phigaro { cpus = 24; memory = '32 GB' }
withLabel: seeker { cpus = 24; memory = '32 GB' }
withLabel: virsorter2 { cpus = 24; memory = '32 GB' }
withLabel: virsorter2 { cpus = 24; memory = '32 GB' }
withLabel: pharokka { cpus = 24; memory = '32 GB' }
}
4 changes: 2 additions & 2 deletions workflows/markdown_report_wf.nf
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ workflow markdown_report_wf {
// 0 load reports
// toolreports/subtabs
logo_channel=Channel.fromPath(workflow.projectDir + "/figures/logo-wtp_small.png", checkIfExists: true)
logo_channel.view()
//logo_channel.view()

// STD WORKFLOW AND --IDENTIFY
if (params.fasta && !params.identify && !params.annotate && !params.setup || params.fasta && params.identify && !params.annotate && !params.setup ) {
Expand Down Expand Up @@ -96,7 +96,7 @@ workflow markdown_report_wf {
}

// 3 sumarize sample reports
summary(sample_report.out.flatten().collect(), report, logo_channel).view()
summary(sample_report.out.flatten().collect(), report, logo_channel)

emit: report
}

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