diff --git a/configs/local.config b/configs/local.config index f58d916..91bc66b 100644 --- a/configs/local.config +++ b/configs/local.config @@ -28,4 +28,6 @@ process { withLabel: phigaro { cpus = params.cores } withLabel: seeker { cpus = params.cores } withLabel: virsorter2 { cpus = params.cores } + withLabel: pharokka { cpus = params.cores } + } diff --git a/configs/node.config b/configs/node.config index a7421a7..48d5242 100644 --- a/configs/node.config +++ b/configs/node.config @@ -25,5 +25,6 @@ process { withLabel: noDocker { cpus = 4; memory = '4 GB' } withLabel: phigaro { cpus = 24; memory = '32 GB' } withLabel: seeker { cpus = 24; memory = '32 GB' } - withLabel: virsorter2 { cpus = 24; memory = '32 GB' } + withLabel: virsorter2 { cpus = 24; memory = '32 GB' } + withLabel: pharokka { cpus = 24; memory = '32 GB' } } diff --git a/workflows/markdown_report_wf.nf b/workflows/markdown_report_wf.nf index 4cf62b8..b204aae 100644 --- a/workflows/markdown_report_wf.nf +++ b/workflows/markdown_report_wf.nf @@ -24,7 +24,7 @@ workflow markdown_report_wf { // 0 load reports // toolreports/subtabs logo_channel=Channel.fromPath(workflow.projectDir + "/figures/logo-wtp_small.png", checkIfExists: true) - logo_channel.view() + //logo_channel.view() // STD WORKFLOW AND --IDENTIFY if (params.fasta && !params.identify && !params.annotate && !params.setup || params.fasta && params.identify && !params.annotate && !params.setup ) { @@ -96,7 +96,7 @@ workflow markdown_report_wf { } // 3 sumarize sample reports - summary(sample_report.out.flatten().collect(), report, logo_channel).view() + summary(sample_report.out.flatten().collect(), report, logo_channel) emit: report } \ No newline at end of file