changed blast DB handling

replikation · Dec 30, 2019 · fe09a19 · fe09a19 · replikation · Dec 30, 2019
1 parent 11662e7
commit fe09a19
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/modules/databases/phage_references_blastDB.nf b/modules/databases/phage_references_blastDB.nf
@@ -1,17 +1,17 @@
 process phage_references_blastDB {
         if (params.cloudProcess) {
-           publishDir "${params.cloudDatabase}/", mode: 'copy', pattern: "blast_phage_DB"
+           publishDir "${params.cloudDatabase}/", mode: 'copy', pattern: "phage_db.*"
         }
         else {
-           storeDir "nextflow-autodownload-databases/"
+           storeDir "nextflow-autodownload-databases/blast_phage_DB"
         }
       label 'metaphinder'
     input:
       file(references)
     output:
-      file("blast_phage_DB/")
+      file("phage_db.*")
     script:
       """
-      makeblastdb -in ${references} -dbtype nucl -parse_seqids -out blast_phage_DB/phage_db -title phage_db
+      makeblastdb -in ${references} -dbtype nucl -parse_seqids -out phage_db -title phage_db
       """
 }
diff --git a/modules/metaphinder.nf b/modules/metaphinder.nf
@@ -27,7 +27,7 @@ process metaphinder_own_DB {
       """
       rnd=${Math.random()}
       mkdir ${name}
-      MetaPhinder.py -i ${fasta} -o ${name} -d ${database}/blast_phage_DB/phage_db
+      MetaPhinder.py -i ${fasta} -o ${name} -d phage_db
       mv ${name}/output.txt ${name}_\${rnd//0.}.list
       """
 }