From fe09a19e1080f6040b50144edc833853eae88905 Mon Sep 17 00:00:00 2001
From: christian <christian.jena@gmail.com>
Date: Mon, 30 Dec 2019 15:48:29 +0100
Subject: [PATCH] changed blast DB handling

---
 modules/databases/phage_references_blastDB.nf | 8 ++++----
 modules/metaphinder.nf                        | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/modules/databases/phage_references_blastDB.nf b/modules/databases/phage_references_blastDB.nf
index 3b73b7f..280fedb 100644
--- a/modules/databases/phage_references_blastDB.nf
+++ b/modules/databases/phage_references_blastDB.nf
@@ -1,17 +1,17 @@
 process phage_references_blastDB {
         if (params.cloudProcess) {
-           publishDir "${params.cloudDatabase}/", mode: 'copy', pattern: "blast_phage_DB"
+           publishDir "${params.cloudDatabase}/", mode: 'copy', pattern: "phage_db.*"
         }
         else {
-           storeDir "nextflow-autodownload-databases/"
+           storeDir "nextflow-autodownload-databases/blast_phage_DB"
         }
       label 'metaphinder'
     input:
       file(references)
     output:
-      file("blast_phage_DB/")
+      file("phage_db.*")
     script:
       """
-      makeblastdb -in ${references} -dbtype nucl -parse_seqids -out blast_phage_DB/phage_db -title phage_db
+      makeblastdb -in ${references} -dbtype nucl -parse_seqids -out phage_db -title phage_db
       """
 }
\ No newline at end of file
diff --git a/modules/metaphinder.nf b/modules/metaphinder.nf
index 39d17e7..0932e36 100644
--- a/modules/metaphinder.nf
+++ b/modules/metaphinder.nf
@@ -27,7 +27,7 @@ process metaphinder_own_DB {
       """
       rnd=${Math.random()}
       mkdir ${name}
-      MetaPhinder.py -i ${fasta} -o ${name} -d ${database}/blast_phage_DB/phage_db
+      MetaPhinder.py -i ${fasta} -o ${name} -d phage_db
       mv ${name}/output.txt ${name}_\${rnd//0.}.list
       """
 }
\ No newline at end of file