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Release v0.6: Phage annotation, Singularity and more
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@replikation replikation released this 05 May 20:23
· 283 commits to master since this release
v0.6
0bc0d7a

As always run a specific release via nextflow run replikation/What_the_Phage -r v0.6 --help

  • implemented annotation and visualization of positive contigs #62 #57
    • hmmscan, prodigal
  • length filter is included as fragments below 1500 bp are usually false-positive #59
  • singularity was implemented #61
  • various bug fixes
  • --setup flag to pre-download container (docker/singularity) and databases
  • unified params for e.g. --database --cachedir
  • improved --help and Readme
  • implemented a -profile Executers,Engines (see --help ) to better merge and support various profiles
    • e.g. -profile local,docker or ebi,singularity
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