- Moving The PercentMissing filtering at the end of the pre-processing steps as it needs to be done before normalization.
- Addition of collapsing code to improve readability.
- Reduction of table size
- Require MsIO version 0.0.8 to allow reading of stored
MsBackendMetaboLights
objects. - Small updates and changes to the Seamless Alignment vignette:
- simplify import of previously stored result object
- avoid using the variable name
param
for every parameter object
- Required alabaster.se.
- In the end-to-end vignette:
- Removal of Spectra data in depth visualisation to move to the Data investigation vignette
- Removal of internal standard matching to features in the Normalization part.
- Save an load lcms1 and res object from the end-to-end workflow to be used in the Seamless Alignment vignette. Using MsIO and alabaster.se
- Require xcms version 4.3.4 and install the package from github.
- Switch to Quarto instead of Rmarkdown
- Addition of Alignment to reference dataset vignette
- Addition of the Data investigation vignette
- Addition of the Install vignette
- Addition of basic files for a workflow package.
- Addition of the end-to-end vignette.