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env.yml
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env.yml
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name: multiomics
channels:
- anaconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.11=hd590300_1
- anyio=4.3.0=pyhd8ed1ab_0
- argon2-cffi=23.1.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py311h459d7ec_4
- arrow=1.3.0=pyhd8ed1ab_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-lru=2.0.4=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=23.2.0=pyh71513ae_0
- babel=2.14.0=pyhd8ed1ab_0
- beautifulsoup4=4.12.3=pyha770c72_0
- binutils_impl_linux-64=2.40=hf600244_0
- bleach=6.1.0=pyhd8ed1ab_0
- brotli-python=1.1.0=py311hb755f60_1
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.27.0=hd590300_0
- ca-certificates=2024.2.2=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.0=h3faef2a_0
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.16.0=py311hb3a22ac_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- comm=0.2.1=pyhd8ed1ab_0
- curl=8.5.0=hca28451_0
- dbus=1.13.6=h5008d03_3
- debugpy=1.8.1=py311hb755f60_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fqdn=1.5.1=pyhd8ed1ab_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=13.2.0=h338b0a0_5
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=13.2.0=h76e1118_5
- glib=2.78.4=hfc55251_0
- glib-tools=2.78.4=hfc55251_0
- graphite2=1.3.13=h58526e2_1001
- gst-plugins-base=1.22.9=h8e1006c_0
- gstreamer=1.22.9=h98fc4e7_0
- gxx_impl_linux-64=13.2.0=h338b0a0_5
- h11=0.14.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- harfbuzz=8.3.0=h3d44ed6_0
- hpack=4.0.0=pyh9f0ad1d_0
- httpcore=1.0.4=pyhd8ed1ab_0
- httpx=0.27.0=pyhd8ed1ab_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.6=pyhd8ed1ab_0
- importlib-metadata=7.0.2=pyha770c72_0
- importlib_metadata=7.0.2=hd8ed1ab_0
- importlib_resources=6.1.3=pyhd8ed1ab_0
- ipykernel=6.25.0=py311h92b7b1e_0
- ipython=8.22.2=pyh707e725_0
- ipywidgets=8.1.2=pyhd8ed1ab_0
- isoduration=20.11.0=pyhd8ed1ab_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.3=pyhd8ed1ab_0
- json5=0.9.22=pyhd8ed1ab_0
- jsonpointer=2.4=py311h38be061_3
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- jupyter=1.0.0=py311h06a4308_8
- jupyter-lsp=2.2.4=pyhd8ed1ab_0
- jupyter_client=8.6.0=pyhd8ed1ab_0
- jupyter_console=6.6.3=pyhd8ed1ab_0
- jupyter_core=5.7.1=py311h38be061_0
- jupyter_events=0.9.0=pyhd8ed1ab_0
- jupyter_server=2.13.0=pyhd8ed1ab_0
- jupyter_server_terminals=0.5.2=pyhd8ed1ab_0
- jupyterlab=4.1.4=pyhd8ed1ab_0
- jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
- jupyterlab_server=2.25.3=pyhd8ed1ab_0
- jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- lame=3.100=h166bdaf_1003
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=21_linux64_openblas
- libcap=2.69=h0f662aa_0
- libclang=15.0.7=default_hb11cfb5_4
- libclang13=15.0.7=default_ha2b6cf4_4
- libcups=2.3.3=h4637d8d_4
- libcurl=8.5.0=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc-devel_linux-64=13.2.0=ha9c7c90_105
- libgcc-ng=13.2.0=h807b86a_5
- libgcrypt=1.10.3=hd590300_0
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libglib=2.78.4=h783c2da_0
- libgomp=13.2.0=h807b86a_5
- libgpg-error=1.48=h71f35ed_0
- libiconv=1.17=hd590300_2
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=21_linux64_openblas
- libllvm15=15.0.7=hb3ce162_4
- libnghttp2=1.58.0=h47da74e_1
- libnsl=2.0.1=hd590300_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.43=h2797004_0
- libpq=16.2=h33b98f1_0
- libsanitizer=13.2.0=h7e041cc_5
- libsndfile=1.2.2=hc60ed4a_1
- libsodium=1.0.18=h36c2ea0_1
- libsqlite=3.45.1=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=ha9c7c90_105
- libstdcxx-ng=13.2.0=h7e041cc_5
- libsystemd0=255=h3516f8a_1
- libtiff=4.6.0=ha9c0a0a_2
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.6.0=hd429924_1
- libxml2=2.12.5=h232c23b_0
- libzlib=1.2.13=hd590300_5
- lz4-c=1.9.4=hcb278e6_0
- make=4.3=hd18ef5c_1
- markupsafe=2.1.5=py311h459d7ec_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=3.0.2=pyhd8ed1ab_0
- mpg123=1.32.4=h59595ed_0
- mysql-common=8.0.33=hf1915f5_6
- mysql-libs=8.0.33=hca2cd23_6
- nbclient=0.8.0=pyhd8ed1ab_0
- nbconvert=7.16.2=pyhd8ed1ab_0
- nbconvert-core=7.16.2=pyhd8ed1ab_0
- nbconvert-pandoc=7.16.2=pyhd8ed1ab_0
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=h59595ed_2
- nest-asyncio=1.6.0=pyhd8ed1ab_0
- notebook=7.1.1=pyhd8ed1ab_0
- notebook-shim=0.2.4=pyhd8ed1ab_0
- nspr=4.35=h27087fc_0
- nss=3.98=h1d7d5a4_0
- openssl=3.2.1=hd590300_0
- overrides=7.7.0=pyhd8ed1ab_0
- packaging=23.2=pyhd8ed1ab_0
- pandoc=3.1.12.2=ha770c72_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- pango=1.52.0=ha41ecd1_0
- parso=0.8.3=pyhd8ed1ab_0
- pcre2=10.42=hcad00b1_0
- pexpect=4.9.0=pyhd8ed1ab_0
- pickleshare=0.7.5=py_1003
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- platformdirs=4.2.0=pyhd8ed1ab_0
- ply=3.11=py_1
- prometheus_client=0.20.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.42=pyha770c72_0
- prompt_toolkit=3.0.42=hd8ed1ab_0
- psutil=5.9.8=py311h459d7ec_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio-client=16.1=hb77b528_5
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pyqt=5.15.9=py311hf0fb5b6_5
- pyqt5-sip=12.12.2=py311hb755f60_5
- pysocks=1.7.1=pyha2e5f31_6
- python=3.11.8=hab00c5b_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-json-logger=2.0.7=pyhd8ed1ab_0
- python_abi=3.11=4_cp311
- pytz=2024.1=pyhd8ed1ab_0
- pyyaml=6.0.1=py311h459d7ec_1
- pyzmq=25.1.2=py311h34ded2d_0
- qt-main=5.15.8=h5810be5_19
- qtconsole=5.5.1=pyhd8ed1ab_0
- qtconsole-base=5.5.1=pyha770c72_0
- qtpy=2.4.1=pyhd8ed1ab_0
- r-base=4.3.3=hb8ee39d_0
- readline=8.2=h8228510_1
- referencing=0.33.0=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- rfc3339-validator=0.1.4=pyhd8ed1ab_0
- rfc3986-validator=0.1.1=pyh9f0ad1d_0
- rpds-py=0.18.0=py311h46250e7_0
- sed=4.8=he412f7d_0
- send2trash=1.8.2=pyh41d4057_0
- setuptools=69.1.1=pyhd8ed1ab_0
- sip=6.7.12=py311hb755f60_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.1=pyhd8ed1ab_0
- soupsieve=2.5=pyhd8ed1ab_1
- stack_data=0.6.2=pyhd8ed1ab_0
- sysroot_linux-64=2.12=he073ed8_17
- terminado=0.18.0=pyh0d859eb_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h0c5db8f_5
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.4=py311h459d7ec_0
- traitlets=5.14.1=pyhd8ed1ab_0
- types-python-dateutil=2.8.19.20240106=pyhd8ed1ab_0
- typing-extensions=4.10.0=hd8ed1ab_0
- typing_extensions=4.10.0=pyha770c72_0
- typing_utils=0.1.0=pyhd8ed1ab_0
- tzdata=2024a=h0c530f3_0
- uri-template=1.3.0=pyhd8ed1ab_0
- urllib3=2.2.1=pyhd8ed1ab_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- webcolors=1.13=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- websocket-client=1.7.0=pyhd8ed1ab_0
- wheel=0.42.0=pyhd8ed1ab_0
- widgetsnbextension=4.0.10=pyhd8ed1ab_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.41=hd590300_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.7=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zeromq=4.3.5=h59595ed_1
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
prefix: /oak/stanford/groups/mrivas/projects/multiomics/tlmenest/conda/envs/multiomics