A framework for exploring and sharing genetic data from large genetic datasets.
For full description to setup MongoDB environment see README.md mongodb/
For full description to setup SciDB environment see README.md scidb/
- Multiple Rare variants and Phenotypes framework, MRP and pre-print
- MultiVariate Polygenic Mixture Model, MVPMM and paper in American Journal of Human Genetics
- Multiple Rare variants and Phenotypes Mixture Model, MRPMM
- snpnet and paper in PLoS Genetics
- sparse-snpnet and snpnet-2.0 with selective inference and paper in Bioinformatics
- snpnet-Cox and paper in Biostatistics
- multiSnpnet Fast Multi-Phenotype Sparse Reduced Rank Regression on Genetic Data and pre-print
- multiSnpnet-Cox, mrcox Efficient Group-Sparse Lasso solver for multi-response Cox model and paper in Bioinformatics
- multiSnpnet-Cox-gpu GPU version of multiSnpnet-Cox
- multiSnpnet-Cox-tv, Coxtv Regularized Cox proportional hazard model with time-varying covariate
- regularizedMR Regularized Mendelian randomization
- cGAUGE: Causal Graphical Analysis Using GEnetics and paper in Nature Communications
- DEcomposition of Genetic ASsociations and paper in Nature Communications
- DeGAs-risk scores and paper in European Journal of Human Genetics
- Sex-specific Effects Mixture Model and paper in European Journal of Human Genetics
- Genetics of 35 blood biomarkers and multiPRS and paper in Nature Genetics