pyproject.toml

[tool.poetry]
name = "mpxsonar"
version = "0.5.4"
description = "A database-driven system for handling genomic sequences and screening genomic profiles."
authors = ["Stephan Fuchs <FuchsS@rki.de>", "Kunaphas Kongkitimanon <KongkitimanonK@rki.de>", "Matthew Huska <HuskaM@rki.de>"]
license = "GPL3"
readme = "README.md"
homepage = "https://github.com/rki-mf1/MpoxSonar"
repository = "https://github.com/rki-mf1/MpoxSonar"

[tool.poetry.dependencies]
python = "^3.9"
biopython = "~1.79"
tqdm = "~4.59.0"
more-itertools = "~8.7.0"
pyaml = "~20.4.0"
tabulate = "~0.8.9"
mpire = "2.6.0"
pandas = "~1.4.0"
requests = "^2.28.0"
python-dotenv = "^0.21.0"
mariadb = "^1.1.4"
psutil = "^5.9.3"
dateparser = "^1.1.4"

[tool.poetry.dev-dependencies]
pytest = "^7.1.2"
coverage = {extras = ["toml"], version = "^6.4.1"}
pytest-cov = "^3.0.0"
black = "^22.6.0"
flake8 = "^4.0.1"
flake8-bandit = "^3.0.0"
flake8-black = "^0.3.3"
flake8-bugbear = "^22.6.22"
flake8-import-order = "^0.18.1"
safety = "^2.0.0"
zimports = "^0.6.0"
pytest-sugar = "^0.9.5"
dash-bootstrap-components = "^1.2.1"

[tool.poetry.scripts]
sonar = "mpxsonar.sonar:run"

[tool.coverage.paths]
source = ["src", "*/site-packages"]

[tool.coverage.run]
branch = true
source = ["mpxsonar"]

[tool.coverage.report]
show_missing = true

[tool.black]
target-version = ['py39']

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"