DOC add comment on binsize definition #332
Workflow file for this run
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| name: TreeCorr CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - releases/* | |
| pull_request: | |
| branches: | |
| - main | |
| - releases/* | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: ${{ matrix.CC }} | |
| CXX: ${{ matrix.CXX }} | |
| strategy: | |
| matrix: | |
| # First all python versions in basic linux | |
| os: [ ubuntu-latest ] | |
| py: [ 3.7, 3.8, 3.9, "3.10", "pypy-3.9" ] | |
| CC: [ gcc ] | |
| CXX: [ g++ ] | |
| # Add some other particular combinations to test | |
| include: | |
| # One in MacOS | |
| - os: macos-latest | |
| py: 3.9 | |
| CC: cc | |
| CXX: c++ | |
| # Check one with clang compiler | |
| - os: ubuntu-latest | |
| py: 3.8 | |
| CC: clang | |
| CXX: clang++ | |
| # Check one with gcc-11 | |
| - os: ubuntu-latest | |
| py: 3.9 | |
| CC: gcc-11 | |
| CXX: g++-11 | |
| # Check one on Windows | |
| - os: windows-latest | |
| py: 3.9 | |
| CC: gcc | |
| CXX: g++ | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| # Helpful for a reliable codecov upload. | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.py }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.py }} | |
| - name: Cache pip | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-${{ matrix.py }}-pip-${{ hashFiles('requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.py }}-pip- | |
| ${{ runner.os }}- | |
| - name: Install libffi, etc. on linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| echo ${{ matrix.os }} | |
| sudo -H apt-get -qq update | |
| sudo -H apt-get install -y libffi-dev openmpi-bin libopenmpi-dev | |
| - name: Install gcc-11 | |
| if: matrix.CC == 'gcc-11' | |
| run: | | |
| echo ${{ matrix.CC }} | |
| sudo -H apt-get -qq update | |
| sudo -H apt-get install -y gcc-11 g++-11 | |
| - name: Install libffi, etc. on MacOS | |
| if: matrix.os == 'macos-latest' | |
| # brew sometimes exits with 1 if things are already installed. | |
| # continue-on-error means that this still counds as success for this step. | |
| continue-on-error: true | |
| run: | | |
| echo ${{ matrix.os }} | |
| brew update | |
| brew install libffi openmpi | |
| - name: Install basic dependencies | |
| run: | | |
| python -m pip install -U pip | |
| # Do this first to clarify potential conflicts | |
| pip install -U numpy | |
| # Standard dependencies | |
| pip install -U -r requirements.txt | |
| # Extra packages needed for testing | |
| pip install -U nose mpi4py coverage mockmpi pytest | |
| # Note: I'd rather include h5py here, but I can't get it to install properly | |
| # on GHA for pypy3. So only do that for regular py3. | |
| - name: Install py3.x dependencies | |
| # They are slow to install on pypy, where some are installed from scratch. | |
| if: matrix.py > 3.0 | |
| run: | | |
| pip install -U matplotlib nbval ipykernel scipy pandas guppy3 h5py pyarrow | |
| - name: Install fitsio everywhere but Windows | |
| if: matrix.os != 'windows-latest' | |
| run: | | |
| pip install -U fitsio | |
| - name: List all installed packages for reference | |
| run: pip list | |
| - name: Build TreeCorr | |
| run: pip install -vvv . | |
| - name: Run unit tests | |
| run: | | |
| cd tests | |
| coverage run -m pytest -v | |
| cd .. # N.B. This seems to happen automatically if omitted. | |
| # Less confusing to include it explicitly. | |
| - name: Upload coverage to codecov | |
| if: matrix.os != 'windows-latest' | |
| #uses: codecov/codecov-action@v1 # This didn't work for me. | |
| # TODO: Supposedly there is a v2 now that might work better. | |
| run: | | |
| cd tests | |
| pwd -P | |
| ls -la | |
| coverage combine || true # (Not necessary I think, but just in case.) | |
| coverage report | |
| ls -la | |
| # cf. https://community.codecov.io/t/github-not-getting-codecov-report-after-switching-from-travis-to-github-actions-for-ci/ | |
| # The solution was to switch to the bash uploader line instead. | |
| bash <(curl -s https://codecov.io/bash) | |
| cd .. | |
| - name: Test MPI | |
| # The code is already mostly checked in the main tests with mock_mpi. | |
| # These just check that the code works when run in a real mpi session. | |
| if: matrix.os != 'windows-latest' | |
| run: | | |
| cd tests | |
| which -a mpiexec | |
| which -a mpirun | |
| mpiexec -n 2 --oversubscribe python -u mpi_test.py #>& mpi2.out | |
| mpiexec -n 1 python -u mpi_test.py #>& mpi1.out | |
| cd .. | |
| - name: Test Tutorial notebook | |
| if: matrix.py == 3.7 | |
| run: | | |
| cd tests | |
| pytest --nbval Tutorial.ipynb --sanitize-with sanitize.cfg --current-env | |
| cd .. | |