This repository contains Jupyter notebooks and codes to reproduce the results and figures published in the paper.
"Alleviating batch effects in cell type deconvolution".
The repository is organized as follows:
Fig. 1
: includes the codes of Main figure 1.
Fig. 3
: includes the codes of Main figure 3.
Fig. 4
: includes the codes of Main figure 4.
Fig. 5
: includes the codes of Main figure 5.
Fig. 6
: includes the codes of Main figure 6.
The dataset used in https://doi.org/10.6084/m9.figshare.27263982.v1.
For citation and further information please refer to this:
Feng, S., Huang, L., Pournara, A.V. et al. Alleviating batch effects in cell type deconvolution with SCCAF-D. Nat Commun 15, 10867 (2024). https://doi.org/10.1038/s41467-024-55213-x.
Thank you for your interest in our work.
If you encounter any issues or have questions about the code or analysis, please open an issue on the GitHub repository.