CHANGELOG

v0.4.0:
  * core:
    - add sort, filter and groupby methods to FeatureList and BioBasket
    - BioSeq.match: rename orf option to rf, allow tuple-like arguments
    - consequently rename BioSeq.meta.features to BioSeq.meta.fts
    - add BioBasket.fts attribute, add add_fts method for BioSeq and BioBasket
    - move all str methods to BioSeq.str and BioBasket.str namespace
    - new class LocationTuple used internally for Feature.locs
    - introduce BioSeq.sl and BioBasket.sl methods and options for slices
      (gap, inplace, update_fts)
    - refactor Defect code
  * cane:
    - add sugar.core.cane module with seq and ft tools
    - add ORF finding functions and methods
    - add final_stop parameter in translate
  * io:
    - add option to store comments in most readers
    - refactor and update read support for BLAST files (outfmt 6, 7 and 10)
    - add read support for MMseqs2 files (fmtmode 0 and 4)
    - add read support for Infernal tblout files
    - stockholm: add support for multiline files
  * more minor and major changes ;)

v0.3.0:
  * io.fasta: robust parsing of seq ids from header line, ignore comment lines
  * io.stockholm: add row2fts and fts2row functions to parse, write GC and similar lines

v0.2.1:
  * translate: add check_start option
v0.2.0:
  * io: add option to write files automatically into an archive
  * io.gff: allow to store comment lines while reading
  * scripts: add translate and feature commands

v0.1.0:
  * initial release