Release v1.1.0

Minor Changes for a smoother ViralClust run

• update of the dimension parameter in HDBSCAN clustering
• better result evaluation (edge case of one cluster handled)
• nice html output, if you want

Release v1.0.0

First main release of ViralClust 🎉

What's New

• additional parameter for switching off the 'sort sequences' pre-processing step
  • useful for ambisense-encoding sequences with ORFs of similar length (e.g. phlebovirus S segment). In this case, the input fasta must contain sequences with the same orientation.
• added HTML output to display the clustering results

First pre-release v0.0.1

Fixes:

• cd-hit, sumaclust and vclust now correctly use the assigned CPUs
• Using NCBI meta information
  • database had a bug that caused unclassified viruses to be grouped to random other taxonomic groups
  • fixed a bug that caused false annotation of the number of clusters per species / genus
• unclustered sequences are now NOT treated as a "normal" cluster for statistics