For FragPipe custom mass spectrometry library epitope searching development
Note: Canonical FASTA UP000005640_9606.fasta was obtained from UniProt, last modified date of 2024-07-24.
This repository contains a docker image and code used to conduct analyses.
- Clone the repository
git clone git@github.com:rokitalab/fragpipe.git
- Pull the docker container:
docker pull pgc-images.sbgenomics.com/rokita-lab/fragpipe:latest
- Start the docker container, from the root directory, run:
docker run --name <CONTAINER_NAME> -d -e PASSWORD=ANYTHING -p 8787:8787 -v $PWD:/home/rstudio/fragpipe pgc-images.sbgenomics.com/rokita-lab/fragpipe:latest
Note: If running on a Macbook with M1 chip, include the argument --platform linux/amd64
- To execute shell within the docker image, from the root directory, run:
docker exec -ti <CONTAINER_NAME> bash