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Handling R scripts without conversion into Rmd #89

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thebioengineer opened this issue Apr 8, 2021 · 0 comments
Open

Handling R scripts without conversion into Rmd #89

thebioengineer opened this issue Apr 8, 2021 · 0 comments

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@thebioengineer
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Currently {DataPackageR} converts R scripts into Rmd via knitr::purl() to then get run via rmarkdown::render() so they are in a "clean" R environment.

Rather than doing that, we should set up the ability to source the R script in a clean R session and maintain the pulling of objects out of the rendered environment for saving/sharing.
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@thebioengineer