droplevels in full_model.matrix, run-extended #714
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, threading] | |
| pull_request: | |
| branches: [main, threading] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| # this sets the env variable to true or false depending on whether the | |
| # commit message contains texts 'run-extended' and 'run-scaling' | |
| DYNAMITE_EXTENDED_TESTS: ${{contains(github.event.head_commit.message, 'run-extended')}} | |
| DYNAMITE_SCALING_TESTS: ${{contains(github.event.head_commit.message, 'run-scaling')}} | |
| steps: | |
| # alternative way to set up the environment variable | |
| # - name: Set the value of DYNAMITE_EXTENDED_TESTS | |
| # if: contains(github.event.head_commit.message, 'run-extended') | |
| # run: | | |
| # if [ "$RUNNER_OS" == "Windows" ]; then | |
| # echo "DYNAMITE_EXTENDED_TESTS=1" >> $env:GITHUB_ENV | |
| # else | |
| # echo "DYNAMITE_EXTENDED_TESTS=1" >> $GITHUB_ENV | |
| # fi | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| extra-repositories: | | |
| https://mc-stan.org/r-packages/ | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 2 | |
| extra-packages: | | |
| rcmdcheck | |
| BH | |
| RcppParallel | |
| RcppEigen | |
| Rcpp | |
| rstan | |
| StanHeaders | |
| stan-dev/cmdstanr | |
| - name: Build CmdStan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan() | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 |