un-hyperlink some urls, update cran comments

ropensci · Sep 8, 2020 · 78bae93 · 78bae93
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diff --git a/cran-comments.md b/cran-comments.md
@@ -14,7 +14,7 @@
 
 --------
 
-This version includes two bug fixes.
+This version includes two bug fixes. This is a re-submission of the same version after fixing some URLs.
 
 Thanks!
 Scott Chamberlain
diff --git a/man-roxygen/occsearch.r b/man-roxygen/occsearch.r
@@ -74,7 +74,7 @@
 #'    all records (\code{FALSE}, default).
 #' @param typeStatus Type status of the specimen. One of many options. See \code{?typestatus}
 #' @param recordNumber Number recorded by collector of the data, different from GBIF record
-#'    number. See <http://rs.tdwg.org/dwc/terms/#recordNumber> for more info
+#'    number. See http://rs.tdwg.org/dwc/terms/#recordNumber for more info
 #' @param lastInterpreted Date the record was last modified in GBIF, in ISO 8601 format:
 #'    yyyy, yyyy-MM, yyyy-MM-dd, or MM-dd.  Supports range queries, smaller,larger (e.g.,
 #'    '1990,1991', whereas '1991,1990' wouldn't work)
@@ -304,4 +304,4 @@
 #' use \code{hasCoordinate=TRUE}, and \code{hasGeospatialIssue=FALSE} to have the
 #' same outcome using \code{\link{occ_count}} with \code{isGeoreferenced=TRUE}
 #'
-#' @references \url{http://www.gbif.org/developer/occurrence#search}
+#' @references https://www.gbif.org/developer/occurrence#search
diff --git a/man/occ_data.Rd b/man/occ_data.Rd
diff --git a/man/occ_search.Rd b/man/occ_search.Rd
diff --git a/vignettes/issues.Rmd b/vignettes/issues.Rmd
@@ -81,7 +81,7 @@ The code `cdround` represents the GBIF issue `COORDINATE_ROUNDED`, which means t
 
 > Original coordinate modified by rounding to 5 decimals.
 
-The content for this information comes from [http://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/OccurrenceIssue.html](http://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/OccurrenceIssue.html).
+The content for this information comes from https://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/OccurrenceIssue.html
 
 ## Parse data based on issues
 

diff --git a/vignettes/rgbif.Rmd b/vignettes/rgbif.Rmd
@@ -154,7 +154,7 @@ m <- name_lookup(query = 'Helianthus annuus', rank="species")
 m$data
 ```
 
-The function `name_usage()` works with lots of different name endpoints in GBIF, listed at [http://www.gbif.org/developer/species#nameUsages](http://www.gbif.org/developer/species#nameUsages).
+The function `name_usage()` works with lots of different name endpoints in GBIF, listed at https://www.gbif.org/developer/species#nameUsages
 
 ```{r}
 name_usage(key=3119195, language="FRENCH", data='vernacularNames')