From 78bae9335606561e0b88807c6ce279bed217e6f4 Mon Sep 17 00:00:00 2001 From: Scott Chamberlain Date: Tue, 8 Sep 2020 08:43:38 -0700 Subject: [PATCH] un-hyperlink some urls, update cran comments --- cran-comments.md | 2 +- man-roxygen/occsearch.r | 4 ++-- man/occ_data.Rd | 4 ++-- man/occ_search.Rd | 4 ++-- vignettes/issues.Rmd | 2 +- vignettes/rgbif.Rmd | 2 +- 6 files changed, 9 insertions(+), 9 deletions(-) diff --git a/cran-comments.md b/cran-comments.md index 69fa27c7..6fcf727c 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -14,7 +14,7 @@ -------- -This version includes two bug fixes. +This version includes two bug fixes. This is a re-submission of the same version after fixing some URLs. Thanks! Scott Chamberlain diff --git a/man-roxygen/occsearch.r b/man-roxygen/occsearch.r index 60f2b25a..7f6536f3 100644 --- a/man-roxygen/occsearch.r +++ b/man-roxygen/occsearch.r @@ -74,7 +74,7 @@ #' all records (\code{FALSE}, default). #' @param typeStatus Type status of the specimen. One of many options. See \code{?typestatus} #' @param recordNumber Number recorded by collector of the data, different from GBIF record -#' number. See for more info +#' number. See http://rs.tdwg.org/dwc/terms/#recordNumber for more info #' @param lastInterpreted Date the record was last modified in GBIF, in ISO 8601 format: #' yyyy, yyyy-MM, yyyy-MM-dd, or MM-dd. Supports range queries, smaller,larger (e.g., #' '1990,1991', whereas '1991,1990' wouldn't work) @@ -304,4 +304,4 @@ #' use \code{hasCoordinate=TRUE}, and \code{hasGeospatialIssue=FALSE} to have the #' same outcome using \code{\link{occ_count}} with \code{isGeoreferenced=TRUE} #' -#' @references \url{http://www.gbif.org/developer/occurrence#search} +#' @references https://www.gbif.org/developer/occurrence#search diff --git a/man/occ_data.Rd b/man/occ_data.Rd index c5955a6d..2bad2334 100644 --- a/man/occ_data.Rd +++ b/man/occ_data.Rd @@ -82,7 +82,7 @@ all records (\code{FALSE}, default).} \item{typeStatus}{Type status of the specimen. One of many options. See \code{?typestatus}} \item{recordNumber}{Number recorded by collector of the data, different from GBIF record -number. See \url{http://rs.tdwg.org/dwc/terms/#recordNumber} for more info} +number. See http://rs.tdwg.org/dwc/terms/#recordNumber for more info} \item{lastInterpreted}{Date the record was last modified in GBIF, in ISO 8601 format: yyyy, yyyy-MM, yyyy-MM-dd, or MM-dd. Supports range queries, smaller,larger (e.g., @@ -838,7 +838,7 @@ res \%>\% occ_issues(-cudc, mutate = "split_expand") } } \references{ -\url{http://www.gbif.org/developer/occurrence#search} +https://www.gbif.org/developer/occurrence#search } \seealso{ \code{\link[=downloads]{downloads()}}, \code{\link[=occ_search]{occ_search()}} diff --git a/man/occ_search.Rd b/man/occ_search.Rd index e4c7151c..ac27c1fa 100644 --- a/man/occ_search.Rd +++ b/man/occ_search.Rd @@ -88,7 +88,7 @@ all records (\code{FALSE}, default).} \item{typeStatus}{Type status of the specimen. One of many options. See \code{?typestatus}} \item{recordNumber}{Number recorded by collector of the data, different from GBIF record -number. See \url{http://rs.tdwg.org/dwc/terms/#recordNumber} for more info} +number. See http://rs.tdwg.org/dwc/terms/#recordNumber for more info} \item{lastInterpreted}{Date the record was last modified in GBIF, in ISO 8601 format: yyyy, yyyy-MM, yyyy-MM-dd, or MM-dd. Supports range queries, smaller,larger (e.g., @@ -899,7 +899,7 @@ occ_search(scientificName = 'Ursus americanus', limit = 0)$meta } } \references{ -\url{http://www.gbif.org/developer/occurrence#search} +https://www.gbif.org/developer/occurrence#search } \seealso{ \code{\link[=downloads]{downloads()}}, \code{\link[=occ_data]{occ_data()}}, \code{\link[=occ_facet]{occ_facet()}} diff --git a/vignettes/issues.Rmd b/vignettes/issues.Rmd index 73385712..98fe3f48 100644 --- a/vignettes/issues.Rmd +++ b/vignettes/issues.Rmd @@ -81,7 +81,7 @@ The code `cdround` represents the GBIF issue `COORDINATE_ROUNDED`, which means t > Original coordinate modified by rounding to 5 decimals. -The content for this information comes from [http://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/OccurrenceIssue.html](http://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/OccurrenceIssue.html). +The content for this information comes from https://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/OccurrenceIssue.html ## Parse data based on issues diff --git a/vignettes/rgbif.Rmd b/vignettes/rgbif.Rmd index b5f5f104..b77982da 100644 --- a/vignettes/rgbif.Rmd +++ b/vignettes/rgbif.Rmd @@ -154,7 +154,7 @@ m <- name_lookup(query = 'Helianthus annuus', rank="species") m$data ``` -The function `name_usage()` works with lots of different name endpoints in GBIF, listed at [http://www.gbif.org/developer/species#nameUsages](http://www.gbif.org/developer/species#nameUsages). +The function `name_usage()` works with lots of different name endpoints in GBIF, listed at https://www.gbif.org/developer/species#nameUsages ```{r} name_usage(key=3119195, language="FRENCH", data='vernacularNames')