diff --git a/DESCRIPTION b/DESCRIPTION index ccf1ac4..59a7c80 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -22,7 +22,7 @@ Authors@R: c( person(given = "Anna Willoughby", role = "rev", comment = c(ORCID = "0000-0002-0504-0605")) ) -Description: An interface to the Mangal database - a collection of ecological networks. This package includes functions to work with the Mangal RESTFul API methods (). +Description: An interface to the Mangal database - a collection of ecological networks. This package includes functions to work with the Mangal RESTful API methods (). URL: https://mangal.io, https://github.com/ropensci/rmangal BugReports: https://github.com/ropensci/rmangal/issues License: MIT + file LICENSE diff --git a/man/get_collection.Rd b/man/get_collection.Rd index 2a052e7..bfe6133 100644 --- a/man/get_collection.Rd +++ b/man/get_collection.Rd @@ -61,9 +61,11 @@ function. The function also accept a numeric vector of Mangal network IDs. }} \examples{ +\donttest{ mg_2 <- get_collection(c(1076:1077), verbose = FALSE) mg_anemone <- get_collection(search_networks(query='anemone\%'), verbose = FALSE) } +} \seealso{ \code{\link[=search_datasets]{search_datasets()}}, \code{\link[=search_interactions]{search_interactions()}}, \code{\link[=search_networks]{search_networks()}}, \code{\link[=search_nodes]{search_nodes()}}, \code{\link[=search_references]{search_references()}}, \code{\link[=search_taxonomy]{search_taxonomy()}}. diff --git a/man/rmangal.Rd b/man/rmangal.Rd index e1c97eb..8dcbf32 100644 --- a/man/rmangal.Rd +++ b/man/rmangal.Rd @@ -13,7 +13,7 @@ Useful links: \itemize{ \item \url{https://mangal.io} \item \url{https://github.com/ropensci/rmangal} - \item Report bugs at \url{https://github.com/mangal-wg/ropensci/issues} + \item Report bugs at \url{https://github.com/ropensci/rmangal/issues} } } diff --git a/vignettes/rmangal.Rmd b/vignettes/rmangal.Rmd index a139e05..a9dc2ed 100644 --- a/vignettes/rmangal.Rmd +++ b/vignettes/rmangal.Rmd @@ -41,7 +41,7 @@ knitr::opts_chunk$set( 3. provides: - [a data explorer](https://mangal.io/#/) to visualize and download data available; - - a [RESTFUL Application Programming Interface (API)](https://mangal-wg.github.io/mangal-api/); + - a [RESTful Application Programming Interface (API)](https://mangal-wg.github.io/mangal-api/); - a client library for Julia: [Mangal.jl](https://github.com/PoisotLab/Mangal.jl); - a client of this API for R: the **rmangal** package described below. @@ -368,7 +368,7 @@ mapView(mg_lag_sf[[1]]$network) + mapView(mg_lag_sf[[2]]$network) As Mangal includes taxonomic identifiers, **rmangal** can readily be combined -with `taxize` (see [taxize book](https://ropenscilabs.github.io/taxize-book/) for more details about this package): +with `taxize` (see [taxize](https://github.com/ropensci/taxize) for more details about this package): ```{R taxo} library(taxize)